HsaINT0051833 @ hg19
Intron Retention
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:14892]
Coordinates
chr9:140007197-140007571:-
Coord C1 exon
chr9:140007405-140007571
Coord A exon
chr9:140007258-140007404
Coord C2 exon
chr9:140007197-140007257
Length
147 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCGCTGCCCCTGCACTCCAGGTG
3' ss Score
8.35
Exon sequences
Seq C1 exon
CCTACGACACGGTCCGCTGGGAGTTCGGCACCTGCCAGCCGCTGTCAGACGAGAAGGACCTGACCCAGCTCTTCATGTTCGCCCGGAATGCCTTCACCGTGCTGGCCATGATGGACTACCCCTACCCCACTGACTTCCTGGGTCCCCTCCCTGCCAACCCCGTCAAG
Seq A exon
GTGAGGCGCCGCCTCCCAGGGCGCAGGGAGAGGCCGGCTGGAGTGTCCCGAGGCTGGTGGTCAGCGGCCTGACCCTCATCCTGGGAGCCAGGGAGGCGGAGCTGGTGGAGGGGACCCCGCTGAGTCGCCGCTGCCCCTGCACTCCAG
Seq C2 exon
GTGGGCTGTGATCGGCTGCTGAGTGAGGCCCAGAGGATCACGGGGCTGCGAGCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-DPP7:NM_013379:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.440 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(71.6=98.1)
A:
NA
C2:
PF055777=Peptidase_S28=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACGACACGGTCCGCT
R:
CTCGCAGCCCCGTGATCC
Band lengths:
219-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)