RnoINT0050879 @ rn6
Intron Retention
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2571153-2571536:-
Coord C1 exon
chr3:2571370-2571536
Coord A exon
chr3:2571214-2571369
Coord C2 exon
chr3:2571153-2571213
Length
156 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTGCTGCCCTTCTCTTCTAGGTG
3' ss Score
13.43
Exon sequences
Seq C1 exon
CCTATGACACCATCAGCCAGAATTTTGGGACCTGCCAATCACTTTCCAGCCCAAAGGACCTGACTCAGCTCTTTGGGTTTGCCCGGAATGCATTTACTGTTCTCGCCATGATGGATTACCCGTACCCTACTAACTTTCTAGGGCCCCTTCCTGCCAACCCTGTCAAG
Seq A exon
GTGAGGTGGCTCTCCCTGGGTGCTAGCCTGATCCAACAGGCTTGTAGCTACCTGCTTTCATACCATCTGCTGTTGTGTCCATGTAGGCTAACAGCCCTGACCCACACTCTGTGAAAGGGGCCTCCGCTGAGATATTCTGCTGCCCTTCTCTTCTAG
Seq C2 exon
GTGGGCTGTGAACGGTTGTTGAGTGAGGGCCAGAGGATCATGGGTCTACGGGCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640:ENSRNOT00000017271:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.9=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGACACCATCAGCCAGA
R:
CTGCCAGTGCCCGTAGACC
Band lengths:
228-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]