MmuINT0052971 @ mm10
Intron Retention
Gene
ENSMUSG00000026958 | Dpp7
Description
dipeptidylpeptidase 7 [Source:MGI Symbol;Acc:MGI:1933213]
Coordinates
chr2:25354233-25354634:-
Coord C1 exon
chr2:25354468-25354634
Coord A exon
chr2:25354294-25354467
Coord C2 exon
chr2:25354233-25354293
Length
174 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATTCTGCTGCCTTTCTCTAGGTG
3' ss Score
11.61
Exon sequences
Seq C1 exon
CCTATGACACCATCAGCCAGAACTTTGGTACCTGTCAATCACTTTCCAGCCCAAAGGACCTGACTCAGCTCTTTGGGTTTGCCCGAAATGCATTTACTGTGCTCGCCATGATGGACTACCCGTATCCTACTGACTTTCTAGGGCCCCTTCCTGCCAACCCTGTCAAG
Seq A exon
GTGAGGTGGCTCTCCCTGGGTGCAGGACCCAGTGCTAGCCTGGTCCAAGAGCCTTGTAGCTATCTGCTTTCATGCCATCAGACACTATCTGCTGTTGTGTCCTGGAAGCTAGCAGCCCTGACCCACGCTCTGTGAAAGGGGCCTCCACTGAGATATTCTGCTGCCTTTCTCTAG
Seq C2 exon
GTGGGCTGTCAACGGCTGTTGAATGAGGGCCAGAGGATCATGGGTCTACGGGCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026958:ENSMUST00000028332:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.9=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGACACCATCAGCCAGA
R:
CTGCCAGTGCCCGTAGACC
Band lengths:
228-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types