GgaINT0126630 @ galGal3
Intron Retention
Gene
ENSGALG00000009105 | DPP7
Description
NA
Coordinates
chr17:697666-698974:+
Coord C1 exon
chr17:697666-697832
Coord A exon
chr17:697833-698913
Coord C2 exon
chr17:698914-698974
Length
1081 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTTAACATGTCTCATGCAGGTT
3' ss Score
7.42
Exon sequences
Seq C1 exon
CTTATGATGAAATCAGCAGCAAAATGGCCACGTGCAGCAAGATTTCTAGCAAGGAGGATCTTTACCAGCTTTTTGGGTTTGCTAGAAATGCCTTCACCATGATTGCCATGATGGACTACCCTTACAAGACCGATTTTATGGGGCACCTCCCTGCTAATCCAGTGAAG
Seq A exon
GTGAGTACCAGGATGCAGGTGAGGGTCGTGCACCTCAGCGACCTGAGCTGGGGGCTGCACGGTGTGGGACATCACCAGCTGTGCACCACCAGGCAGTGGTGATGTGAGGAAACAGTGGTGAATGTCACAGCCGTTCCGCTCTGACAGTAAATCTGCATATTTTAATCCTCTCAGAAATAGCAACTGCTGTTTGTAATGCAGTGCTGTTAGGCTTGCTGGGATGGCATGCTGGAGCCGTACCTCCTGTGCTCTGTGTTTGCTTTGAACACAAAGGCCTGTGCAGCCTCACTGGCTTTGGGTTTTGAATGCAGAAAACCTGCAGCTTTTCAAAAAAGGCTGTTTTGATGTAGCCCACCTTGACACATTTTTATAGGCATATTTTTCTTGGCAGAGGCCTGAAAATAAGGCTCCCTTTTCTAGAATCACCGGGGAAGATGGCATATGTCAGAGTACAGTGTAGAGAAATGCCTGCTGCTGTGAGGGCCAAGTGTCGGGAAAGGTGCTACACAGGGTTACAAACACCAGTTTATTTTGAGAAAGGTCACTGTTCACCAGTGACCTTCGGTAATCAAAAGATCACCAGTTACTGTTGCAGCTCTTGGCTTCTGCTTTGCTGTCAGCCTGGTGCTGCTGATGGGCCTTGATGTGCCTCTGGCCTCATGCCTAAGAGAACAGCTGGCATGTATGGTTCAAATATTACCTGGAGCAAAATGCATGCTGTGCAAGGGATCACACAGGCTGTGCTGTGTGGGGGCACAGAAGATGCTGTCCCTGGCCATGCAGTTCCTTTCTAGGGTCGGTTTAACAAAGAGTAAATTGGAAATAATTGTTCTAAGTTTGCTTGAGAAGGGCCTTAAAATACTCTGATTGGACGAGGATGGAGCTGTTGGCTATCACTGTCCTCCCTTTGTCTGTGTATTTTTTTACTGGAGAGAAAATAAAGAAGTGTTGCTTTTGGCCATTGGAAAGTTGCTGAGCCATCAGCTGTGGAAGTGATGCTTTTAACTTCCAGCTTAACCCCTCTGCAGCATAGACTGTTGTCTGTCCTGTCTGCAATTTGCCTTTAACATGTCTCATGCAG
Seq C2 exon
GTTGGCTGTGAACAAATCCTTGCCCACACAGACCCTATTCAAGGCCTGGCAGCTCTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105:ENSGALT00000014829:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.9=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAATCAGCAGCAAAATGGCC
R:
CAACAAGAGCTGCCAGGCC
Band lengths:
222-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]