HsaINT0052264 @ hg19
Intron Retention
Gene
ENSG00000134765 | DSC1
Description
desmocollin 1 [Source:HGNC Symbol;Acc:3035]
Coordinates
chr18:28709214-28710801:-
Coord C1 exon
chr18:28710756-28710801
Coord A exon
chr18:28710675-28710755
Coord C2 exon
chr18:28709214-28710674
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TGTGCTCTTTTTTGATACAGAAG
3' ss Score
7.77
Exon sequences
Seq C1 exon
GAATCCATTAGAGGACACACTCTGATTAAAAATTAAACAGTAAAAG
Seq A exon
GTAAATCAAAGACATCATTTTTCTGCTAATATGTTTAGGTGTTTTTTAAAAAATAATAAAATGTGCTCTTTTTTGATACAG
Seq C2 exon
AAGGTGTATTTGTGTGGACAAGATGAGGAGCATAAACATTGTGAAGACTACGTTTGTTCGTATAACTATGAAGGCAAAGGTTCTCTGGCCGGCTCAGTAGGTTGCTGCAGCGATCGGCAGGAAGAAGAGGGACTGGAGTTTCTAGATCACCTGGAACCCAAATTTAGGACATTAGCAAAGACATGCATCAAGAAATAAATGTGCCTTTTAATAGTGTAATATCCACAGATGCATAAGTAGGAATTTATTACTTGCAGAATGTTAGCAGCATCTGCTAATGTTTTTGTTTATGGAGGTAAACTTTGTCATGTATAGGTAAGGGTACTATAAATATGAGATTCCCCTACATTCTCCTTGTCTGGTATAACTTCCATGTTCTCTAGAAATCAAGGTTTTGTTTGTTAATTCTCTTTTATATGCATGTATATATTGCCCTTTTCACGACTGTACTGTACACCTTCTTGCACCTTTTATTTGCAAACTGATGTTACTTTTTGTGCTGTGGAAGAGCATTTGGGAAAGCTGGGTATTATAGAGGCCAATGAAAGATGAATTTGCATTGTAGATGTACGAATTAAATATGTTCTTCAAAATCTTGGGGAGAATTATGTTCTTAGAACATAGTTGGTGCCAGATAATTGCATTCTCTCCACCTGAGTGGTTTAAAAAGGACTTTTAAGTATTCTTCAGTGCAATCTTCAGTTTTGTGATTAAGTTCATTTCTCTTTTACACTTTTGTACTCCTCAGAGCAGTGCTCCCAGCATTGTTTTCTTTCAGGATCCTTCAGAGCTCAGTCCCTGGACCTCTGCCCATGTGGATTTGTTGTTAGGTCACTCCAACTTCTAGGGTTCTTGGAAAGATAAGGACCAGAACAAGCTCATAGCAAATTGAGGGGCAGAGATTTTATGAAGATTACATGAGAAGATTTCCATGAAAGAATTGCAGCCCTGAGGTCCATGGGTTGACTTATGCTCACAAATATGTTTCGTTTGCTCAACATGGTTTACTACTAACATTTTAAAAATATAAATACTTTAGCAAAAACATTCACTCTTGAGTTTGACATAGGCCTGCCTTATCTGTGGTTGCCACCTGCCATCTCCAAGCATTTGGACAACTAGCCCTGATGCATTAGGCTGCAACTCTGATATACAGAGACTAGCACCTTGAATATGCCAGAAATTGAATTACCATCTGTATTAGAACTTAAGACTCAGCCTAAATTTACAGTTACTTTAAGAAAATGGGCAGTCAGAATTAGGGACTAGAATGTATATGAGAAACCCCCACTCTACTAAAAATATAAGAAATTAGCCGGACATGGTGGCGAATGACTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAATCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134765-DSC1:NM_004948:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104912=Cadherin_C=PD(36.0=97.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTAGAGGACACACTCTGA
R:
TCCAGTCCCTCTTCTTCCTGC
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)