MmuINT1009108 @ mm10
Intron Retention
Gene
ENSMUSG00000044322 | Dsc1
Description
desmocollin 1 [Source:MGI Symbol;Acc:MGI:109173]
Coordinates
chr18:20084703-20085880:-
Coord C1 exon
chr18:20085835-20085880
Coord A exon
chr18:20085752-20085834
Coord C2 exon
chr18:20084703-20085751
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TGTGTTCTTTCTCCATACAGAAG
3' ss Score
10.11
Exon sequences
Seq C1 exon
GAATCCATTAGAGGACACACTCTGATTAAAAATTAAACAGTAAAAG
Seq A exon
GTAAATCCAAGATATCATTTTTATGGTAGTCTGTTTAGGTGTCTTTTAAAAGTCATAATAAACTGTGTTCTTTCTCCATACAG
Seq C2 exon
AAGGTGTATTTGTGTGGGCAAGCTGAAGAACACAAGCATTGTGAAGACTACGTTCGCCCATATAACTATGAAGGCAAAGGCTCCATGGCTGGCTCTGTGGGCTGCTGCAGTGATCGGCAGGAGGAAGAAGGGCTAGAGTTTTTAGATCAATTGGAACCAAAATTTAGGACATTAGCAAAGACATGTGTGAAGAAATAAGGTGCTGGTTAATAGAGCAACTTCTGTAAATGAATACAGAGGTGACACTGGATGTAAGGGGATAGCAGCTTGTAGTAGCAACTTTGGGTATTAAAAGGAGGTAAAGTCATTTGTGGATAAGGGTGCTTTACCAATCATAGCTCCCCAAATTCTCCTTGTCTCCAGAACTTCCCTGTTGTCTAGACAGGACATTGCCACGGTTGCTTTTCTTTCTGTGCATGTATGCATTGCCCTTTCAGGACTGAACTGCATGTGCCACTAAAGTTCTGGTGATGTTTGAAACTTAAGCTCTTTTGCATGCTATGCAAGACTCCATAATGGAGTTGGGTATTGTGGAAGCTTAAAATATGAGTTTGCATTGTATATATATAAATTAAATATTTTTCAAGGACATGGGAAGAATTTTGCTTCTAAAATATTTCCTTTAGTGCCAAGATATTGTTTTCCCTTTTCCAGAGTAGCTTCAAATGAAATTTTAAGTATTTTTAGGTATAGCCTTTTGTGTACCTAAACAAGCTCCACTCTTACTGTACATTTCCCTCATTAGAAGAGCACTATCTTCATTTAGGAACCTCCATAGCTTAATACTTGGGTTTCTGCCCATATGGCTATGTTATCATCAGGATCCTGGAGCTTCTATCTGAATGACATAGGTCAGAACATCATGCTCACAGCACCTAGAACTATAAAGATTTGTCAAAAACTACTGGCATTCTTATCTTTATAGATTTACAGAATATATATATATATATATATATATATATATATATATATCTTGCTGGTCAATCTAAATGTGATATTATCTTACCACATTCATATGTACTAAAAATATTAAAAATTATATAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044322:ENSMUST00000038710:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTAGAGGACACACTCTGA
R:
TCTAGCCCTTCTTCCTCCTGC
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types