HsaINT1011885 @ hg38
Intron Retention
Gene
ENSG00000134765 | DSC1
Description
desmocollin 1 [Source:HGNC Symbol;Acc:HGNC:3035]
Coordinates
chr18:31129236-31130838:-
Coord C1 exon
chr18:31130793-31130838
Coord A exon
chr18:31130712-31130792
Coord C2 exon
chr18:31129236-31130711
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TGTGCTCTTTTTTGATACAGAAG
3' ss Score
7.77
Exon sequences
Seq C1 exon
GAATCCATTAGAGGACACACTCTGATTAAAAATTAAACAGTAAAAG
Seq A exon
GTAAATCAAAGACATCATTTTTCTGCTAATATGTTTAGGTGTTTTTTAAAAAATAATAAAATGTGCTCTTTTTTGATACAG
Seq C2 exon
AAGGTGTATTTGTGTGGACAAGATGAGGAGCATAAACATTGTGAAGACTACGTTTGTTCGTATAACTATGAAGGCAAAGGTTCTCTGGCCGGCTCAGTAGGTTGCTGCAGCGATCGGCAGGAAGAAGAGGGACTGGAGTTTCTAGATCACCTGGAACCCAAATTTAGGACATTAGCAAAGACATGCATCAAGAAATAAATGTGCCTTTTAATAGTGTAATATCCACAGATGCATAAGTAGGAATTTATTACTTGCAGAATGTTAGCAGCATCTGCTAATGTTTTTGTTTATGGAGGTAAACTTTGTCATGTATAGGTAAGGGTACTATAAATATGAGATTCCCCTACATTCTCCTTGTCTGGTATAACTTCCATGTTCTCTAGAAATCAAGGTTTTGTTTGTTAATTCTCTTTTATATGCATGTATATATTGCCCTTTTCACGACTGTACTGTACACCTTCTTGCACCTTTTATTTGCAAACTGATGTTACTTTTTGTGCTGTGGAAGAGCATTTGGGAAAGCTGGGTATTATAGAGGCCAATGAAAGATGAATTTGCATTGTAGATGTACGAATTAAATATGTTCTTCAAAATCTTGGGGAGAATTATGTTCTTAGAACATAGTTGGTGCCAGATAATTGCATTCTCTCCACCTGAGTGGTTTAAAAAGGACTTTTAAGTATTCTTCAGTGCAATCTTCAGTTTTGTGATTAAGTTCATTTCTCTTTTACACTTTTGTACTCCTCAGAGCAGTGCTCCCAGCATTGTTTTCTTTCAGGATCCTTCAGAGCTCAGTCCCTGGACCTCTGCCCATGTGGATTTGTTGTTAGGTCACTCCAACTTCTAGGGTTCTTGGAAAGATAAGGACCAGAACAAGCTCATAGCAAATTGAGGGGCAGAGATTTTATGAAGATTACATGAGAAGATTTCCATGAAAGAATTGCAGCCCTGAGGTCCATGGGTTGACTTATGCTCACAAATATGTTTCGTTTGCTCAACATGGTTTACTACTAACATTTTAAAAATATAAATACTTTAGCAAAAACATTCACTCTTGAGTTTGACATAGGCCTGCCTTATCTGTGGTTGCCACCTGCCATCTCCAAGCATTTGGACAACTAGCCCTGATGCATTAGGCTGCAACTCTGATATACAGAGACTAGCACCTTGAATATGCCAGAAATTGAATTACCATCTGTATTAGAACTTAAGACTCAGCCTAAATTTACAGTTACTTTAAGAAAATGGGCAGTCAGAATTAGGGACTAGAATGTATATGAGAAACCCCCACTCTACTAAAAATATAAGAAATTAGCCGGACATGGTGGCGAATGACTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAATCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134765:ENST00000257197:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104912=Cadherin_C=PD(36.0=97.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTAGAGGACACACTCTGA
R:
TCCAGTCCCTCTTCTTCCTGC
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains