RnoINT0051268 @ rn6
Intron Retention
Gene
ENSRNOG00000056258 | Dsc1
Description
desmocollin 1 [Source:RGD Symbol;Acc:1310768]
Coordinates
chr18:11877561-11878642:-
Coord C1 exon
chr18:11878597-11878642
Coord A exon
chr18:11878514-11878596
Coord C2 exon
chr18:11877561-11878513
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TGTGCTCTTTCTCCATACAGAAG
3' ss Score
10.08
Exon sequences
Seq C1 exon
GAATCCATTAGAGGACACACTCTGATTAAAAATTAAACAGTAAAAG
Seq A exon
GTAAATCCAAGATATCATTTTTATGCTGGTCTGTTTAGGTGTCTTTTAAAAGTCATAATAAACTGTGCTCTTTCTCCATACAG
Seq C2 exon
AAGGTGTATTTGTGTGGACAAGCTGAGGAACACAAGCATTGTGATGACTACGTTCGCTCATATAACTATGAAGGCAAAGGCTCCATGGCTGGTTCTGTGGGTTGCTGCAGTGATCGGCAGGAGGAAGAAGGGCTAGAGTTTTTAGATCACTTGGAACCGAAATTTAGGACATTAGCAAAGACATGTGTGAAGAAATAAAGGTGCTAGTTAGTAGAGAAACATCTGCAAATGAACACAGGGGTGTCACTGGATGTAAGAGGATAACAGCTTGTAGTAGCGACTTTGGGTATTAAAAGAAAGTAAAGTCATTTGTAGATAAGGGTGCTTTACCAACCATAGCTCCCCAAATTCTCCTTGTCCCCAGAACTTGCCTGTTGTCTAGACAGGATGTTGTCACTGTTGCTTTTCTTTCTGTGCGTGTCTATGGCCTCTTCAGGACTGAACTGCGTGTGCCACTGAAATTCTGGTGATGTCTGAAACTTAAGCTCTTTTGCACACTGTGCAAGGCTCCATGGTAGAGTTGGGTATTGTGGAAGCTTAAAATATGAGTTTGCATTGTGTATATAAAAAGTAAATATTTTTCAAGGTCATGGGAATTCTGCTTCTAAAGTATTTCCTTTAGTGCCAAGATATTGTTTTTCCCTTTTCCAGAGTAGCTTCAGATAAACTTTTAAGTGTTTTAGGTATAGCCTTTTGTGTGCCTAACAAGCTCTACTCTCACTGTACATTTCCCTCATTAGAAGAGTGCTATCTTCATTCAGAGCCTTCAAAGCTTACGACTCGATCTCTGCCCACATGGCTATGTTATCATTGGGATCATGGAGCTTCTGTCTGAATAACATGGGTCAGAGCATCATGCTCACTGGACCTAAAACTGTAGAGATTTGTCAAGAATTCCATGAAAATGAAAACACTGGAATCCTGATTTCTATAAACTAGCTTAGGCTCACGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056258:ENSRNOT00000078207:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTAGAGGACACACTCTGA
R:
TCTAGCCCTTCTTCCTCCTGC
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]