HsaINT0052313 @ hg19
Intron Retention
Gene
ENSG00000134762 | DSC3
Description
desmocollin 3 [Source:HGNC Symbol;Acc:3037]
Coordinates
chr18:28570052-28574462:-
Coord C1 exon
chr18:28574420-28574462
Coord A exon
chr18:28574339-28574419
Coord C2 exon
chr18:28570052-28574338
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTTTTTAAAAAATTTTACAGAAA
3' ss Score
6.8
Exon sequences
Seq C1 exon
GAATCCATTAGAGGACACACTGGTTAAAAATTAAACATAAAAG
Seq A exon
GTAAATAAAAATAAATTTTATGTTCATATATTTAAGTTGTTTAAAACTATAATGCAATTCATTTTTTAAAAAATTTTACAG
Seq C2 exon
AAATTGCATCGATGTAATCAGAATGAAGACCGCATGCCATCCCAAGATTATGTCCTCACTTATAACTATGAGGGAAGAGGATCTCCAGCTGGTTCTGTGGGCTGCTGCAGTGAAAAGCAGGAAGAAGATGGCCTTGACTTTTTAAATAATTTGGAACCCAAATTTATTACATTAGCAGAAGCATGCACAAAGAGATAATGTCACAGTGCTACAATTAGGTCTTTGTCAGACATTCTGGAGGTTTCCAAAAATAATATTGTAAAGTTCAATTTCAACATGTATGTATATGATGATTTTTTTCTCAATTTTGAATTATGCTACTCACCAATTTATATTTTTAAAGCAAGTTGTTGCTTATCTTTTCCAAAAAGTGAAAAATGTTAAAACAGACAACTGGTAAATCTCAAACTCCAGCACTGGAATTAAGGTCTCTAAAGCATCTGCTCTTTTTTTTTTTTACGGATATTTTAGTAATAAATATGCTGGATAAATATTAGTCCAACAATAGCTAAGTTATGCTAATATCACATTATTATGTATTCACTTTAAGTGATAGTTTAAAAAATAAACAAGAAATATTGAGTATCACTATGTGAAGAAAGTTTTGGAAAAGAAACAATGAAGACTGAATTAAATTAAAAATGTTGCAGCTCATAAAGAATTGGGACTCACCCCTACTGCACTACCAAATTCATTTGACTTTGGAGGCAAAATGTGTTGAAGTGCCCTATGAAGTAGCAATTTTCTATAGGAATATAGTTGGAAATAAATGTGTGTGTGTATATTATTATTAATCAATGCAATATTTAAAATGAAATGAGAACAAAGAGGAAAATGGTAAAAACTTGAAATGAGGCTGGGGTATAGTTTGTCCTACAATAGAAAAAAGAGAGAGCTTCCTAGGCCTGGGCTCTTAAATGCTGCATTATAACTGAGTCTATGAGGAAATAGTTCCTGTCCAATTTGTGTAATTTGTTTAAAATTGTAAATAAATTAAACTTTTCTGGTTTCTGTGGGAAGGAAATAGGGAATCCAATGGAACAGTAGCTTTGCTTTGCAGTCTGTTTCAAGATTTCTGCATCCACAAGTTAGTAGCAAACTGGGGAATACTCGCTGCAGCTGGGGTTCCCTGCTTTTTGGTAGCAAGGGTCCAGAGATGAGGTGTTTTTTTCGGGGAGCTAATAACAAAAACATTTTAAAACTTACCTTTACTGAAGTTAAATCCTCTATTGCTGTTTCTATTCTCTCTTATAGTGACCAACATCTTTTTAATTTAGATCCAAATAACCATGTCCTCCTAGAGTTTAGAGGCTAGAGGGAGCTGAGGGGAGGATCTTACTGAAAGCACCCTGGGGAGATTGATTGTCCTTAAACCTAAGCCCCACAAACTTGACACCTGATCAGGTCTGGGAGCTACAAAATTTCATTTTTCTCCTCACTGCCCTTCTTCTGAGTGGCATTGGCCTGAATCAAGGAAAGCCAGGCCTTGTGGGCCCCCTTCTTTCGGCTTTCTGCTAAAGCAACACCTCCAGCAGAGATTCCCTTAAGTGACTCCAGGTTTTCCACCATCCTTCAGCGTGAATTAATTTTTAATCAGTTTGCTTTCTCCAGAGAAATTTTAAAATAATAGAAGAAATAGAAATTTTGAATGTATAAAAGAAAAAGATCAAGTTGTCATTTTAGAACAGAGGGAACTTTGGGAGAAAGCAGCCCAAGTAGGTTATTTGTACAGTCAGAGGGCAACAGGAAGATGCAGGCCTTCAAGGGCAAGGAGAGGCCACAAGGAATATGGGTGGGAGTAAAAGCAACATCGTCTGCTTCATACTTTTTCCTAGGCTTGGCACTGCCTTTTCCTTTCTCAGGCCAATGGCAACTGCCATTTGAGTCCGGTGAGGGATCAGCCAACCTCTTCTCTATGGCTCACCTTATTTGGAGTGAGAAATCAAGGAGACAGAGCTGACTGCATGATGAGTCTGAAGGCATTTGCAGGATGAGCCTGAACTGGTTGTGCAGAACAAACAAGGCATTCATGGGAATTGTTGTATTCCTTCTGCAGCCCTCCTTCTGGGCACTAAGAAGGTCTATGAATTAAATGCCTATCTAAAATTCTGATTTATTCCTACATTTTCTGTTTTCTAATTTGACCCTAAAATCTATGTGTTTTAGACTTAGACTTTTTATTGCCCCCCCCCCCCCCTTTTTTTTTTGAGACGGAGTCTCGCTCTGACGCACAGGCTGGAGTGCAGTGGCTCCGATCTCTGCTCACTGAAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCTAATTTTTTGTATTTTTAATAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGACCCACCGCTCCCGGCCTTGTTTTCCGTTTAAAGTCGTCTTCTTTTAATGTAATCATTTTGAACATGTGTGAAAGTTGATCATACGAATTGGATCAATCTTGAAATACTCAACCAAAAGACAGTCGAGAAGCCAGGGGGAGAAAGAACTCAGGGCACAAAATATTGGTCTGAGAATGGAATTCTCTGTAAGCCTAGTTGCTGAAATTTCCTGCTGTATCCAGAAGCCAGTTTTATCTAACGGCTACTGAAACACCCACTGTGTTTTGCTCACTCCCTCACTCACCGATCAAAACCTGCTACCTCCCCAAGACTTTACTAGTGCCGATAAACTTTCTCAAAGAGCAACCAGTATCACTTCCCTGTTTATAAAACCTCTAACCATCTCTTTGTTCTTTGAACATGCTGAAAACCACCTGGTCTGCATGTATGCCCGAATTTGTAATTCTTTTCTCTCAAATGAAAATTTAATTTTAGGGATTCATTTCTATATTTTCACATATGTAGTATTATTATTTCCTTATATGTGTAAGGTGAAATTTATGGTATTTGAGTGTGCAAGAAAATATATTTTTAAAGCTTTCATTTTTCCCCCAGTGAATGATTTAGAATTTTTTATGTAAATATACAGAATGTTTTTTCTTACTTTTATAAGGAAGCAGCTGTCTAAAATGCAGTGGGGTTTGTTTTGCAATGTTTTAAACAGAGTTTTAGTATTGCTATTAAAAGAAGTTACTTTGCTTTTAAAGAAACTTGGCTGCTTAAAATAAGCAAAAATTGGATGCGTAAAGTAATATTTACAGATGTGGGGAGATGTAATAAAACAATATTAACTTGGTTTCTTGTTTTTGCTGTATTTAGAGATTAAATAATTCTAAGATGATCACTTTGCAAAATTATGCTTATGGCTGGCATGGAAATAGAAATAATTATGTCTTTGTTGTATTAATGGGGAATATTTTGGACAATGTTTCATTATCAAATTGTCGACATCATTAATATATATTGTAATGTTGGGAAGAGATCACTATTTTGAAGCACAGCTTTACAGATGAGTATCTATGATACATATGTATAATAAATTTTGATTGGGTATTAAAAGTATTAGAAGGTGGTTATAATTGCAGAGTATTCCATGAATAGTACACTGACACAGGGGTTTTACTTTGAGGACCAGTGTAGTCAAGGGAAAACATGAGTTAAAAAGAAAAGCAGGCGATATTGCAGTCTTGATTCTGCCACTTACAGGATAGATAACGCCTGAACTTTAATGACAAGATGATCCAACCATAAAGGTGCTCTGTGCTTCACAGTGAATCTTTTCCCCATGCAGGAGTGTGCTCCCCTACAAACGTTAAGACTGATCATTTCAAAAATCTATTAGCTATATCAAAAGCCTTACATTTTAATATAGGTTGAACCAAAATTTCAATTCCAGTAACTTCTATTGTAACCATTATTTTTGTGTATGTCTTCAAGAATGTTCATTGGATTTTTGTTTGTAATAGTAAAATACCGGATACATTTCACGTGTCCTTCAGTATTGATTTGGTTGAATATTGGGTCATAATGGTTGAGAAGCATGGACACTAGAGCCAGAATGCTTGGATATGAATCCTGGATCTGTCACTTACTTCTGTGTGACCTTTGAAAGGCTACTTATTTCCTCTCTTAGCTTTCTCATTAAAATCAATGAACAATGCCAGCCTCATGGGGTTGTTGAATGATTAAATGAGTTACTATACCTAAAGTACATAGAACACTGCCTGCACATAGTAAAAGAATTATAAGTGTGAGGTAGTTGGTAAAATTATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134762-DSC3:NM_024423:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104912=Cadherin_C=PD(51.2=97.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTAGAGGACACACTGGT
R:
CAAGGCCATCTTCTTCCTGCT
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)