HsaINT0054583 @ hg19
Intron Retention
Gene
ENSG00000239974 | EGFL8
Description
EGF-like-domain, multiple 8 [Source:HGNC Symbol;Acc:13944]
Coordinates
chr6:32134275-32134587:+
Coord C1 exon
chr6:32134275-32134397
Coord A exon
chr6:32134398-32134477
Coord C2 exon
chr6:32134478-32134587
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCCGGGCGCTGTGTTCCAGGAC
3' ss Score
6.01
Exon sequences
Seq C1 exon
TCAGGGAGTCTGCTCCAAGCAGACACTGGTGGTCCCGCTCCACTACAACGAGTCCTACAGCCAACCAGTGTACAAGCCCTACCTGACCTTGTGCGCTGGGAGGCGCATCTGCAGCACTTACAG
Seq A exon
GTGAGGGATGGGGAGATGGGACCCCAAGAACCCCAACTAGGACCCGTACTCAGGGTCCTGAGCCGGGCGCTGTGTTCCAG
Seq C2 exon
GACCATGTACCGCGTTATGTGGCGGGAGGTGAGGCGGGAGGTTCAGCAGACCCATGCAGTGTGCTGCCAGGGCTGGAAGAAGCGGCACCCGGGGGCGCTCACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000239974-EGFL8:NM_030652:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCAGACACTGGTGGTCC
R:
CACTGCATGGGTCTGCTGAAC
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)