MmuINT0055821 @ mm10
Intron Retention
Gene
ENSMUSG00000015467 | Egfl8
Description
EGF-like domain 8 [Source:MGI Symbol;Acc:MGI:1932094]
Coordinates
chr17:34614669-34615001:-
Coord C1 exon
chr17:34614879-34615001
Coord A exon
chr17:34614779-34614878
Coord C2 exon
chr17:34614669-34614778
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AGCCTGCTTCTGTGTTCTAGGAC
3' ss Score
10.23
Exon sequences
Seq C1 exon
TTTGGGAGTGTGCTCCAAGCAGACGCTGCTGGTTCCTCTCCGTTACAACGAGTCCTATAGTCAACCGGTGTACAAACCCTACCTGACCTTGTGTGCGGGGAGGCGCATATGTAGCACCTACAG
Seq A exon
GTGAGAGGTGAAGCCCCTAAGGCTCCCAGGTCTCAAAGGGACCCCAAGAGGCAAGTCCAGGATGGGTACCTACAGATATGAGCCTGCTTCTGTGTTCTAG
Seq C2 exon
GACCACATACCGTGTGGCCTGGCGGGAGGTGAGGCGGGAGGTACCACAGACACACGTGGTGTGCTGTCAGGGCTGGAAGAAGCCACACCCAGGAGCTCTCACCTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015467:ENSMUST00000015611:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(57.7=97.6)
A:
NA
C2:
PF075468=EMI=PD(40.8=76.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGCTGCTGGTTCCTCTC
R:
CATCACAGGTGAGAGCTCCT
Band lengths:
213-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types