HsaINT0054583 @ hg38
Intron Retention
Gene
ENSG00000241404 | EGFL8
Description
EGF like domain multiple 8 [Source:HGNC Symbol;Acc:HGNC:13944]
Coordinates
chr6:32166498-32166810:+
Coord C1 exon
chr6:32166498-32166620
Coord A exon
chr6:32166621-32166700
Coord C2 exon
chr6:32166701-32166810
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCCGGGCGCTGTGTTCCAGGAC
3' ss Score
6.01
Exon sequences
Seq C1 exon
TCAGGGAGTCTGCTCCAAGCAGACACTGGTGGTCCCGCTCCACTACAACGAGTCCTACAGCCAACCAGTGTACAAGCCCTACCTGACCTTGTGCGCTGGGAGGCGCATCTGCAGCACTTACAG
Seq A exon
GTGAGGGATGGGGAGATGGGACCCCAAGAACCCCAACTAGGACCCGTACTCAGGGTCCTGAGCCGGGCGCTGTGTTCCAG
Seq C2 exon
GACCATGTACCGCGTTATGTGGCGGGAGGTGAGGCGGGAGGTTCAGCAGACCCATGCAGTGTGCTGCCAGGGCTGGAAGAAGCGGCACCCGGGGGCGCTCACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241404:ENST00000395512:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(57.7=97.6)
A:
NA
C2:
PF075468=EMI=PD(40.8=76.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCAGACACTGGTGGTCC
R:
CACTGCATGGGTCTGCTGAAC
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains