HsaINT0054753 @ hg19
Intron Retention
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone-lysine N-methyltransferase 1 [Source:HGNC Symbol;Acc:24650]
Coordinates
chr9:140710399-140711977:+
Coord C1 exon
chr9:140710399-140710514
Coord A exon
chr9:140710515-140711890
Coord C2 exon
chr9:140711891-140711977
Length
1376 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CACTACTCTCTATTTTTCAGGGC
3' ss Score
9.74
Exon sequences
Seq C1 exon
GATGGCCGGCTCCTGCCAGAGTTCAACATGGCGGAGCCTCCCTTGATCTTCGAATGCAACCACGCGTGCTCCTGCTGGAGGAACTGCCGAAATCGCGTCGTACAGAATGGTCTCAG
Seq A exon
GTGAGAGGCAGCTTCCTGCCGGAGCCCCACATTCTGCTCGTATTAGCACGTATTAGCACGGAGGTCACCCCGACAGACAAGAACTTAACGTGTTTGGATGCACGCACATGTGTGTTTGCAGATAGAGCCGACAAGTTACCTGAGCCCTTTATCCTCTAGAAATGTCACTTGTGCCATAAATCACGAGTCATGCTTCCCCCAGCACAGACTTCGGCATGAGAGAAGGAGCAGGTTGTTGGGTCAGTCCAGCTAAAAGCAGAGGAACGGACTTGGCCTAAGAATTACCTTTGTTACCGAGTTCATGCGAACATTCTTCAACAGGTTAGGGCTGTCGTAGTTCTATTTTAATACTCCAGTCATTTTCTAAATATTCTCTGTTCTCTGGGCTTCCCTAACAGTGAGGTGATGTCCCAACGCTTCTCAGGCTGCGTGGACTCCTTGTTCCTGGGTTGCTCAGGACGCTCATGGAGTAAGGCTTGCCCAGCGCCCTTCCCCAGCTGGGCTTGGTCCCCTGACCGCCCAGCAGCTGCGTCTCCTTTCCCTGGATTCTGGTCTTGAGCATTTCCTCCGCAAATGTGCCCGAGATTGGAGAAGTCAAAGCTCCTCTGAGTCATAAGGGAAAGTTATGCACACTTAAATTTAGCTGAACACTCATTTTTATAGTATTGACTTTTTTGTGACCTCGATAAACTTGGTTCATGGTGAAAGGCAGTCTCTGTCCTTGGTATGGTAGAAAGGCCTGGTGGTGAGGACCCACGCCAGACAGACGCGAGGCAGACACGGGACACATGCCAGATGGGCAGACGCGAGGCACGTGGTTCTGAGGGCTCCTCAGAGGCCCACATGCCAGGACCGCCCAGCCGCCCTCCTCCAGATCTACCCGGCCACCCTCCCCCAGGCCTGCCCAACCACCTTCCCCCAGCCCTGAGAAACCCTCGACCGCCACCTCCCCTGCCACCCTCCCCCAGCCCTGAGGGGCCTGTGGGCTCCTTGTCGGGAGCAGGCTGGGCTGCAGGTGTCACCACAGCCTGGTCCAGCTATAGGCTTCTCTAGTATTAGCACCTCTGCCCCTCACAGTGCCTAGTGGCCCAGGCCCAGCTCTGTCCCCATGTTACAGATGGGGACACCGAGCCACGGCCAGGACCAGTGACTTGCCGAGGTTGTGGGCTGGGGTGCTCCTGGCTGATCCCCGGGTTCTTGGCTCCCTGAGAGTGCGAGATGCCGTGTCTGTGAGGTGCCTGCAGCATCGAACGCTTCGGATACAGAACCAGTTTTCTTCCTCATTTCAGTGACGTGGCACCAGCTGGCTTTTGCTGACCATTGTGGCAACAGGCTGAGGCTGTGGCCTGGGTTCACCACTACTCTCTATTTTTCAG
Seq C2 exon
GGCAAGGCTGCAGCTCTACCGGACGCGGGACATGGGCTGGGGCGTGCGGTCCCTGCAGGACATCCCACCAGGCACCTTTGTCTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090-EHMT1:NM_024757:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
NA
C2:
PF0085623=SET=PU(15.9=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGCCAGAGTTCAACAT
R:
CAGACAAAGGTGCCTGGTGG
Band lengths:
192-1568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)