BtaINT0054905 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105434438-105435762:-
Coord C1 exon
chr11:105435647-105435762
Coord A exon
chr11:105434525-105435646
Coord C2 exon
chr11:105434438-105434524
Length
1122 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GACGTACCCATGTTTTCCAGGGC
3' ss Score
7.21
Exon sequences
Seq C1 exon
GACGGTCGGCTGCTGCCAGAGTTCAACATGGCAGAGCCGCCCCTGCTGTTCGAGTGCAACCACGCCTGCTCCTGCTGGAGGACGTGCCGCAACCGCGTGGTGCAGAATGGCCTCAG
Seq A exon
GTGAGCCCCTGCAGCAGCCAAGGGCGCAGGGCTGGGCCCCGGGCAGTTCAGGGGCGCCCCGTGTGTCCACAGATGGGAGAACGTGTGTTTAGCGTGTGCGTGCATGTTCCTTGGCGCCTTGGCCTGTGTTTCGGGTTGATGTAAAGAGCAGAAGCCGTGTATGTGTGTGTGTGCGTGTGTATGTGTGCGCGCACGCGCGCCTGCGTGCGTGTGTATGTGCGTGTTCTTTGGCGCCGCGGCCTGTGTTACACGCTGATGTAAAGAGCAGAAGCCGTGTCGCCCCCCTGCTCAGATGTGGGTTCAGGTCACACAGCCTGAAGGCGAGAGCCAGGCCTCCCATGAGCCGCCCGTCCAGGCTCGCGAGTTTGAGCTGTGTGCACACTTGGGTCCCCTGGCGCTGCACCCTGGGTGTCGTGGAGGTGCTGTCGGGTGTAACGCCTGTTGTCGCTTAGATATGTGTGTGTTTGGTCTGCTGACCACCCAGAGCCAGACTGTGGGCCTGTGGTCATGGAGCTTTTTCTGTGAAATGCTCGAGAGTTGAAAAGTCTAAGATCATAAGGGCAGATTTTCGTAATGAGCTCAGTGTTTTGGGGCCTGTTAACAGTAAGTAACTTGGCTGCACCTTGTGAGCAGCCCACGCTTCTGTGTCCTTGTGTGTGGCTGGAAGTCCTTGGGGAGGGGACAGACATACCCGTCTCCCTCGAGGGCCCTGGAACACAGACAGTAGGCGGATGCCCTGACTCTCGGGGCTGGGAGGGTCCCCCCTGCCCCTCAGAGGTCAGCTCAGCCTTGCCGTTGGCACGCCGCCCGCGCCTAGCTGCATTCCAGTCGGGGCCAGCAGGCTGCTCACCCGCCTGGTCCTTGTCACAGCTGAGGCTTGGCCAGCCTGGTCCCGTGGTGGGTGCTGGGGTCACAGGGCGAGCGGGCGGGGCTGAGGTCCCCTGCGTCCTGAGGGCGTGAAGGGCGGTGCGGCGGGGCCTGGGGTCGCTCGGAGCCTCTGTTGCTCCCTCACCCGGCGCTGAAGCGTCTCCAGACACGAAGGTGGTCTTCTCTGTCCTTTACTCCTGAACCTCGCGTGTCACTTGTGAGTGGAGTGACCTGGGACGTACCCATGTTTTCCAG
Seq C2 exon
GGCGAGGCTGCAGCTCTATCGGACACAGAACATGGGCTGGGGCGTCCGGTCCCTGCAGGACATCCCACTGGGCACCTTTGTTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148:ENSBTAT00000016118:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
NA
C2:
PF0085623=SET=PU(15.9=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCAGAGTTCAACATGG
R:
GCAAACAAAGGTGCCCAGTG
Band lengths:
191-1313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development