RnoINT0053556 @ rn6
Intron Retention
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:1977587-1978546:-
Coord C1 exon
chr3:1978431-1978546
Coord A exon
chr3:1977674-1978430
Coord C2 exon
chr3:1977587-1977673
Length
757 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCACCTATCTTGTTTTCCAGGGC
3' ss Score
10.7
Exon sequences
Seq C1 exon
GACGGGCGACTTCTGCCTGAGTTTAACATGGCAGAACCACCCTTGATCTTCGAGTGCAATCATGCCTGCTCCTGCTGGAGGAACTGCCGCAATCGCGTGGTGCAGAATGGTCTCAG
Seq A exon
GTGAGGGGTGTAGCTGCATTAGGTCATGCTGGCCAGAGGCATGTATATCTGTGGGTAGAGCCAATGTCTGGGAGAAGGAATGTGTTTGTGTGCAAACCCAGCCAAGCTTCACTGGCTTAGATATGAGTGGGCTTGCTTCATTTGGCTTCAGTGTTAGAGAAAGCCAACCAACATTTCTCTGTTCCTTCTTGGTTCTTCACCCACCCCCCACCCCCTTCTCCTGTGCCTCCAGTGTCACAGCTAGAATTAAGTCTTCAACGTTGGTAGCTATGGTCTGTTGGGCAGAGTGTACACACTTCTGTACCTGTATCCCCATATTTACAAATGGACCAATAGGATGGGCATTGTCTGAGAATACTATGAAGAGAGGGTGAATTCCTTAAGCATGGTCTACCTAGAACCCACCCAGCCAGTAGGAGCTTGCCTGGCTGCTTATTGCTGGCAAACGCCTTCTAGTGGAAGCACTTGTACCAGGTGAATACCTTTAGTCTCCACTGCTGCCTTGTGGATTAAGCCACAAGTTGATGAAACCAAGGGCTGCTATACTTTATGCTTTGACAGTCTGACTCCTGTGTTGTCTGTGTCCTGTGTGTGGTGCTGGGTCTGTAAGGTGACTGGAGCTGCCTTCAGTCACCTACAGAGTTGTAATTCTTCCTTGGTTTGGAACCTACATCTTTTTTCTCAATTTGCTCAATTCAGGATGGATACAGTTGGTTTGCAGACCATCAGGTACATGTCCACCTATCTTGTTTTCCAG
Seq C2 exon
GGCAAGGCTGCAGCTTTATCGGACACAGGACATGGGCTGGGGTGTGCGGTCCCTTCAGGATATCCCGCTGGGCACCTTTGTCTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242:ENSRNOT00000066777:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
NA
C2:
PF0085623=SET=PU(15.9=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGACTTCTGCCTGAGTTTA
R:
CGCAGACAAAGGTGCCCAG
Band lengths:
198-955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]