DreINT0061768 @ danRer10
Intron Retention
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28894398-28895224:-
Coord C1 exon
chr5:28895109-28895224
Coord A exon
chr5:28894485-28895108
Coord C2 exon
chr5:28894398-28894484
Length
624 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAAT
5' ss Score
6.8
3' ss Seq
CATTATGGTCTCATTCGCAGGCT
3' ss Score
8.25
Exon sequences
Seq C1 exon
GATGGCCGATTGCTAAAAGAATTCTGCCGGGATGATCCACCCTTTCTGTTCGAGTGTAACCACGCCTGTTCCTGTTGGAGAACGTGCCGGAATAGAGTCATACAGAATGGCCTTCG
Seq A exon
GTAAATATGAGTGGTATTTTTCACTTTATTAGATACACCATGCTGGATGTTCCTTTTAACATAAGCTTTTTAACTGCCTTTAATTATTTGAGATGTAGATTTAACAAGTGCTAGAAACATGTGTCAGGTCCAGATTGACATGAAGGCATCATATAGTTTCTGCAGATTCATGAATCGTCCTGTACCAGCATATTGCGTTCTTGCTTGAATTAGGGCTGAGCTGATAAACGATATTATATCGTATCGCAATAATATTTGTCAATTACAATGATACGCTCTGTACTTTTTCTCTATATATTGATCTAAGAGCCAATCACACTGCAGAAATGTGCAACAATGGGAATCTAAAAGTGTGTTGATTTTAGAGATTCATCGATTTTTCAGCCACTGACAATTTATCAGCTGAATTTATGTTATGCCATTTAATGGACCCTTTTATTTTTGTGGCTTCAGTCATCGTTGGGGTACTCTTTTAAATCTGGAAGCATTAACAACTTGTGTTGAAATATCGTTTAATATGGAAAATAATTACCAAGACTGCATTTTTGTCATATCTCCCAGCCCTAGCCTAAATCATGTAACTCTGAATTCATGTGCATAATTTCATTATGGTCTCATTCGCAG
Seq C2 exon
GCTCAGGCTGCAGGTGTTTAGGACTGAGAGGATGGGTTGGGGAGTTCGAACACTGCAGGATATTCCTGAGGGAGGTTTTGTATGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157:ENSDART00000126018:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
NA
C2:
PF0085623=SET=PU(15.9=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATTGCTAAAAGAATTCTGCCG
R:
TCGCATACAAAACCTCCCTCA
Band lengths:
198-822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]