HsaINT0056558 @ hg19
Intron Retention
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:24860]
Coordinates
chr9:140332612-140335901:-
Coord C1 exon
chr9:140335738-140335901
Coord A exon
chr9:140332758-140335737
Coord C2 exon
chr9:140332612-140332757
Length
2980 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCACGGCCGTCCCCCCACAGGAA
3' ss Score
10.33
Exon sequences
Seq C1 exon
CCAGGTGCACAGCGCATCGCCCGAGGCTGTCACCGCCCTGCCCCGCCCACCCCAGCTGTCCTGGACCCAGGGGCAGGGAGAGGCTGGACGCCAGGTGCGCGGACACAGAAGCGTCTAAGCACAGCTTCCTCCTTGCCGCTCCGGGAAGTGGGCAGCCAGCCCAG
Seq A exon
GTGAGGGTCCAAAGGGATGTCCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGCTCTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGCCTGGGGGGCTCTCCTGGTCTGGGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGGGGCTGTCCTGGTCTGGGAATCTGTTCTGTGTGAGGGGGTGTCCTGGTCTGGGGGGCTCTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGCGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGATCTGGGAGTCTGTTCTGTGTGAGGGGGTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTCAGGGACTGTTCTGTGTGAGGGGATGTCCTGGCCTGGGGGACTCTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGCTCTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGCTCTCCTGGTCTGGGGGCACTGTCCTGGTCTCGGGGGGGCTGTTCTGGTCTGGGGGGCGCTTTCCTGGTCTGAGGAGCTGTTCTGATCTGGGAGGCTGTTCTGGTCTTGGGGGTCTTTTGAGTGTGGGAGAGGTTGCCCCAACCTCTTTGCCTACCTGGAGGCTCAGGCCTGGGGGTCTCAGGTGGCTACATCTTCTGGGTGTGGAGTCCCTGTGTTCCTGGCCCCTGTCACCTGTTTGTCCCTATGAGGTGGCCTATGGCCTGGGTGCTGGTTGGGGACACAGGCTGGGCCCTGTCTGGGCTGGACCGGCCTCCTGTCCTCTCTGAGCCTCTGTCATCTACCCTCCTTAAAATGGGCTTATATCCCCCGGACATACAGAATTGCGTGAGGACCCCACAGCGTGTCCCACTTTCCACGTGCCCAGGAGCCCCAGGTCAGGACCAGGGCAGCACCCGCGCCTGCCACTCAGTGTGGGTGCAACGTTTCCCGGGGGAACACGATAGGACACGGTCACATGGGGTTCAGGTGCCGGGACCTTGGCAGGCAGCCTCTGGCTTTGACCACTCCTTTGGCAGTGGTACCCGTGTGAAGTGGGGCTGTATGGGGCACAGGGTCGGCCTGGGGTAGTTTGAGAGCTGAGACCCTTGCTGGGCGTTTGGGCAGAGGAGGAGGTGGACACCTCGGCCACAGGGCTAGAGAAGCCCAGGCCCCTCAGATGGCATCCCTGGGTCCACCTCCCGACCAGGCGCCATCTGGCACCAGCTAAGAAGGTGCAGAGTCAGATTAGGGAAGCCTTGGGCTGGATTTCCAGAGAAACCGATGTTGTTAAGAAGCCTCACACTCGGCTTCCTAGGATGGCTGGCCTCACCCTGGGTTCACCCACAGCCCCTCGGCAACAGTCCCCTCAGGGCTCCAGAGAGAAACCCCCACCCTAGGAGTGCCTGGGGTGGGGGCCGCAGAGAGGAGGCAGAGCCCTGGGCCCCCAGTGCAGGCTGGAGCTGTGGCTGCTCCTGGGGAGGGTGGCACGGGAGAGGCAGGACCGAGGGGTGGGGACACAGGGTGGCCCCATCACATGGTGGGGGCAGCTCCGCGAGTCCCATCCGAGGGGGTCCGAGGGGGCTACTTGGATCCTGCTGGGGCTGTGTCCCCAGACGAGGCCTCTGCTGCCCCCCGCCCCCCTCCCACAGGGCCCTCTGATGCCCATGGCACCCCTGGCAGGCGTGGCTCCTGGGGAGTGGTCCTTGGCCACGGGAGGCGTCTGAGCCCCGGGGATGCCTCTATGGCCACGGGAGACCGTCTGAGCCCCGGGGATGCCTCTATGGCCACGGGAGGCCGTCTGAGCCCCGGGGATGCCTCTATGGCCACGGGAGGCCGTCTGAGCCCCGGAGATGCCTCTATGGCCACGGGAGGCCGCCTGAGCCCCGGAGATGCCTCTAAGGCCACGGGAGACCGTCTGAGCCCCGGGGATGCCTCTATGGCCACGGGAGGCGTCTGAGCCCCGGAGATGCCTCTAAGGCAAGTGGCTGTCCAGGGGTGCGTCTCCAGGGAGACGGGGAGCGAAGCCTCTGCCTCTGGAGGGCGGGATGGGGACACCAAGTGCAGCCTGGGTGCCCACGGCCGTCCCCCCACAG
Seq C2 exon
GAACCAGTACCACCTGCACCATGGGGCTGTCCCGGAAGGAGCAGGTCTTCTTGGCCCTGCTGGGGGCCTCGGGGGTCTCAGGCCTCACGGCACTCATTCTCCTCCTGGTGGAGGCCACCAGCGTGCTCCTGCCCACAGACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-ENTPD8:NM_001033113:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0115012=GDA1_CD39=PU(2.5=19.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)