MmuINT0057741 @ mm9
Intron Retention
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:24935843-24937467:+
Coord C1 exon
chr2:24935843-24936071
Coord A exon
chr2:24936072-24937325
Coord C2 exon
chr2:24937326-24937467
Length
1254 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTCCACTTCACCCTTGCAGCTC
3' ss Score
9.97
Exon sequences
Seq C1 exon
ACAACTAGGGACGCTGCTCTTCCTCCCTCCACAGGAGCAAGATGTAAGCCTGGAATTAATGAGATAGAGTAAAATTAGTAGATGCCAGAGCAGCAGCTAGAGAGCAGCCTGCTCCTCCCACCACAGCCCCAGGTTCAAGTAGGTGGAGACGGGGTGTGGAGGACAGCAGGTGTGCAGGTCAGAAGCAGAACTTCCTCAAGCTATCCTTGAAAGTTGGCTCCCAGTGCAG
Seq A exon
GTGAGCGACCTCAGGGGCTGTCCTGGTCTGTGGGCTGGCTTTGGTAGGGGAGTGCCTTTCCTGGGTGAGTGAGGGGACTGCCTGTCCTGGGTGAGGGGAGCCTGCCTTGTGCTTTTTGTATAACAACCCAGTCTCAGGTATGACACCCCTGAGGTGCGGTCTGTGTTTTCTTAGTTACTACCTGTGACCCACTTGTCCCTGTGCTTTGGGGTGCTGGCTGGAGTTACAATTCAGTCTCTGGGCAGGTCATTTGTCCTTTTTCCTCCGTTTCCCTTACTTCAGATGAGCTAGTGCCCCATTTAGCCTGTCCCTAGGAGTCCTAACCTCTGTTTACCATTCTTGAAACACTGGGAGTATTTTCATTCTTGGGGGATATGCCATGAGATACCAAGTCACAGAATTTCGAAGTGCTTGGATTCTCAGGGAACACCCCGGCTTTGCCAAGTTCAGTAGGTAACAACAGCCACTGTGAGGTATGTTCTGAAGCAGAGCTGACCAGGAGCTGCCTAGTGGCTTCTCTGTACATTGGTAGGCTGGGTAGGTCAGGACTCGGAATCCCTGCTGGGCTCCAGAGGAGATACGGGTATAGATGTCTTGAGTACTGTGGAGAATAGCATTCCATGGTCAGCTGCCCAGGTTCATCCGGGGTCAGCTAAAATCTCTCAGATCTCCATTAGAGAAATCCAAGTTTAGGATTTCAAGAAAAATCAGATGTCTTTGTTAAGAAGAATAGAATGCTAGCTGGCCTCTTGAGGGGCCCACACCTGGCCCCTGGATTCCATGTAGCATGGTTCTGAGGCTCCCAGAAAGAAGTCCAGCACTGGGAGACTCTGAAGTCCTGAGTTCAGTCCAGACATGGGACTCTTCATGGGGAATCAAGAGAGCAAGGGTCCAGAGGGAGAGGAAGGGTGATGCCTACGTAGGAGGTCTAGATGGGGCTTCATTAGCCCTTGATAGTGGCACCAGAAATGTCCATCTTGGCTCCACTGGGCTGTACCCTCTGTACTGGCCCCCAGGCTCTGTGACAATACTGGGCTTGCCCAATAAGACTTTGGAAACTGTTCTTGGCCATTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTGGCTGTCCTGGCTACTGATCTAACCTAGGAGTCCCAGATTTGACATCTGAGGAAGGTTGGAACGTGTTAAGGCCCTTCCTCTAGAAGGCTGGAGTTGGAACAGCAGGAGTCTGAGTGTCCACTGCTGTCCACTTCACCCTTGCAG
Seq C2 exon
CTCAGACCCTCTCACCATGGGACTCTCCTGGAAGGAACGGGTCTTCATGGCTCTGTTGGGAGTTGCAGCAGCCTCTGGCCTCACCATGCTCGTCCTCATCCTGGTGAAGGCAATCAATGTTCTCTTGCCTGCAGACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813-Entpd8:NM_028093:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0115012=GDA1_CD39=PU(2.5=19.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCTTCCTCCCTCCACAG
R:
GTGTCTGCAGGCAAGAGAACA
Band lengths:
354-1608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: