HsaINT1012593 @ hg38
Intron Retention
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr9:137438160-137441449:-
Coord C1 exon
chr9:137441286-137441449
Coord A exon
chr9:137438306-137441285
Coord C2 exon
chr9:137438160-137438305
Length
2980 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCACGGCCGTCCCCCCACAGGAA
3' ss Score
10.33
Exon sequences
Seq C1 exon
CCAGGTGCACAGCGCATCGCCCGAGGCTGTCACCGCCCTGCCCCGCCCACCCCAGCTGTCCTGGACCCAGGGGCAGGGAGAGGCTGGACGCCAGGTGCGCGGACACAGAAGCGTCTAAGCACAGCTTCCTCCTTGCCGCTCCGGGAAGTGGGCAGCCAGCCCAG
Seq A exon
GTGAGGGTCCAAAGGGATGTCCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGCTCTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGCCTGGGGGGCTCTCCTGGTCTGGGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGGGGCTGTCCTGGTCTGGGAATCTGTTCTGTGTGAGGGGGTGTCCTGGTCTGGGGGGCTCTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGCGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGATCTGGGAGTCTGTTCTGTGTGAGGGGGTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTCAGGGACTGTTCTGTGTGAGGGGATGTCCTGGCCTGGGGGACTCTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGCTCTCCTGGTCTGGGGGGGGCTGTCCTGGTCTGGGGGGCTGTCCTGGTCTGGGGGACTGTTCTGTCTGAGGGGGTGTCCTGGTCTGGGGGGCTCTCCTGGTCTGGGGGCACTGTCCTGGTCTCGGGGGGGCTGTTCTGGTCTGGGGGGCGCTTTCCTGGTCTGAGGAGCTGTTCTGATCTGGGAGGCTGTTCTGGTCTTGGGGGTCTTTTGAGTGTGGGAGAGGTTGCCCCAACCTCTTTGCCTACCTGGAGGCTCAGGCCTGGGGGTCTCAGGTGGCTACATCTTCTGGGTGTGGAGTCCCTGTGTTCCTGGCCCCTGTCACCTGTTTGTCCCTATGAGGTGGCCTATGGCCTGGGTGCTGGTTGGGGACACAGGCTGGGCCCTGTCTGGGCTGGACCGGCCTCCTGTCCTCTCTGAGCCTCTGTCATCTACCCTCCTTAAAATGGGCTTATATCCCCCGGACATACAGAATTGCGTGAGGACCCCACAGCGTGTCCCACTTTCCACGTGCCCAGGAGCCCCAGGTCAGGACCAGGGCAGCACCCGCGCCTGCCACTCAGTGTGGGTGCAACGTTTCCCGGGGGAACACGATAGGACACGGTCACATGGGGTTCAGGTGCCGGGACCTTGGCAGGCAGCCTCTGGCTTTGACCACTCCTTTGGCAGTGGTACCCGTGTGAAGTGGGGCTGTATGGGGCACAGGGTCGGCCTGGGGTAGTTTGAGAGCTGAGACCCTTGCTGGGCGTTTGGGCAGAGGAGGAGGTGGACACCTCGGCCACAGGGCTAGAGAAGCCCAGGCCCCTCAGATGGCATCCCTGGGTCCACCTCCCGACCAGGCGCCATCTGGCACCAGCTAAGAAGGTGCAGAGTCAGATTAGGGAAGCCTTGGGCTGGATTTCCAGAGAAACCGATGTTGTTAAGAAGCCTCACACTCGGCTTCCTAGGATGGCTGGCCTCACCCTGGGTTCACCCACAGCCCCTCGGCAACAGTCCCCTCAGGGCTCCAGAGAGAAACCCCCACCCTAGGAGTGCCTGGGGTGGGGGCCGCAGAGAGGAGGCAGAGCCCTGGGCCCCCAGTGCAGGCTGGAGCTGTGGCTGCTCCTGGGGAGGGTGGCACGGGAGAGGCAGGACCGAGGGGTGGGGACACAGGGTGGCCCCATCACATGGTGGGGGCAGCTCCGCGAGTCCCATCCGAGGGGGTCCGAGGGGGCTACTTGGATCCTGCTGGGGCTGTGTCCCCAGACGAGGCCTCTGCTGCCCCCCGCCCCCCTCCCACAGGGCCCTCTGATGCCCATGGCACCCCTGGCAGGCGTGGCTCCTGGGGAGTGGTCCTTGGCCACGGGAGGCGTCTGAGCCCCGGGGATGCCTCTATGGCCACGGGAGACCGTCTGAGCCCCGGGGATGCCTCTATGGCCACGGGAGGCCGTCTGAGCCCCGGGGATGCCTCTATGGCCACGGGAGGCCGTCTGAGCCCCGGAGATGCCTCTATGGCCACGGGAGGCCGCCTGAGCCCCGGAGATGCCTCTAAGGCCACGGGAGACCGTCTGAGCCCCGGGGATGCCTCTATGGCCACGGGAGGCGTCTGAGCCCCGGAGATGCCTCTAAGGCAAGTGGCTGTCCAGGGGTGCGTCTCCAGGGAGACGGGGAGCGAAGCCTCTGCCTCTGGAGGGCGGGATGGGGACACCAAGTGCAGCCTGGGTGCCCACGGCCGTCCCCCCACAG
Seq C2 exon
GAACCAGTACCACCTGCACCATGGGGCTGTCCCGGAAGGAGCAGGTCTTCTTGGCCCTGCTGGGGGCCTCGGGGGTCTCAGGCCTCACGGCACTCATTCTCCTCCTGGTGGAGGCCACCAGCGTGCTCCTGCCCACAGACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833:ENST00000344119:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0115012=GDA1_CD39=PU(2.5=19.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains