RnoINT0055222 @ rn6
Intron Retention
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2288667-2290434:+
Coord C1 exon
chr3:2288667-2289143
Coord A exon
chr3:2289144-2290292
Coord C2 exon
chr3:2290293-2290434
Length
1149 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCCCACCTAACCCTTGCAGCTC
3' ss Score
7.96
Exon sequences
Seq C1 exon
GCCGAGTTTTACCCAGTAACTTATGTTTTAAGAACCCAGCAGATCTGAAGGAGAGTGACTTCCCTTGGCCCACCTACATCAGCTCTGCAGCACCCTTCCGTAGCCTCAGGCAACTGTTCCCTGACCACGTCTGGCCTGGCCCAAGTGAGAAGGACAGAGGACAAGGTCCACAGTAACAGGGAGGGTGTCTCCAGTCCTGTCTTCTCTGTCATTCCCAGGTCAGTTCTAAAGTCCATCCTGAGAACTAGGGACGCCACTCTTCCTCCCTCCCCAGAAGCAAAATGTAACCCCAGGATCGGGATCCGTGAGGCAGAGTGAAATTAGTAGGTGTCTGGCCCAAGCAGCAGCTGGAGAGAAGCCCGCTCCTCCCCCCACAGCCCCAGGTTCAAGTGGGTGGAGACAGGGTGTGGAGACAGGGTGTGGAGGGCAGAAGCAGAACTTCCTCCAGCTACCCTTGAAAGCTGGTATCCAGCGCAG
Seq A exon
GTGAGGACCCCATGGGCTGTCCTGGTCTGTGGGCTGGCTCTGGTAGGGGACTGCCTGTCCTGGGGGAGGGAACTGTTTGTCCTGGGTGAGAGGAGCCTGCCTTGTCCCTTGTGCTGCGGTCCTGAGGTGGGGTCTGTGTTCTCTTGGTTCCTATCTGGGAGCCACTTGTCCCTGTGCTCTAGGGTGCTGGCTCCAGTTACTGCTCAGGCTCGGGGCAGGCGTTTGCCCACTTTCCTCAGTTCCCCTTCCTTCAGATTAGCTCTTGCCCCACTTAGCCTACTCCCGGAAGTCCTAACCCCCGTCATTCTTGAACACTGGGAGTGTCTCCACTCTTGGGGGATATGCCATGAGATTCCAAGTCACAGAATTTCAAAGTGCTTGGAGGTTCAGGGAACACCATGGCTTTGCCTAGTTCAATAGGCAACAACATCCATTGTGAGGCTTGCTCCAAAGCAGAGCTAACCAGAAGCTTGGAGGCTGGAATAGGTCAGGACATAGAACCCCCTCTGGGCTCCAAAAAAGATCAAGGTATAGACATCTTGAGCATCATGGAGAGTAGCATTCCATGGTCAGTCAGCTGCCCAGGTTCATCTGGGGTCAGCTAAAATCTATCAGATCTCCATTAGAGAAATCCAAGTTTAGAATTTCAAGAAGAAACAAATGTCTTTGTTAAAAATAGAGCTAGCTGGCCTCTGGAGGAGCCCACACCTGGCCTCTCGTAGCATGGTCCTAAGGCTCCCAGAGAGAAGTCCTGCACTGGGAGACCCTGGTTTGAAGTTCTGAGTTCAGTCCAGAGCTGGGACTCTTCATGTGGAGTCAAGAAAGCAAGGTCCCAGAGGGAGAGGGAGGGCGAGGCCTACCTAAGGGGAGGGATTCCATTAGCTCTTGATAGTGGCACTAGAAATGGCTGTCCTGGCTCCACGGGGCTGTGTCCTCAGTCAGTACTCCCTGTATTGGCCCCCAACCTCTGTAAGAATATTGGGCTTGCCCAGTTGGACTCAGCAAACTGTTGGTGGCCAGTTTTTTACTGTGGCAGATTTGACAACATCGGAGGAAGGTTGGGACATTTAAGACCCTTCCTCTATAAGGCGGGGGTTGGGACAGCAGGTGGGGTCTGAGAGTCCACTGCTGCCCACCTAACCCTTGCAG
Seq C2 exon
CTCAGCCCCTCCCACCATGAGACTTTCCTGGAAGGAACGGGTCTTCATGGTCCTGTTGGGAGTTGCAGCAGCTTCTGGCCTCACCATGCTCATCCTCATCCTGGTGAAAGCAACCAATGTTCTCCTGCCTGCAGACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239:ENSRNOT00000012289:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0115012=GDA1_CD39=PU(1.9=19.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGTCTCCAGTCCTGTCTT
R:
CAACAGGACCATGAAGACCCG
Band lengths:
353-1502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]