MmuINT0057741 @ mm10
Intron Retention
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:25080322-25081947:+
Coord C1 exon
chr2:25080322-25080551
Coord A exon
chr2:25080552-25081810
Coord C2 exon
chr2:25081811-25081947
Length
1259 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACTTCACCCTTGCAGCTCAGACC
3' ss Score
-0.1
Exon sequences
Seq C1 exon
GACAACTAGGGACGCTGCTCTTCCTCCCTCCACAGGAGCAAGATGTAAGCCTGGAATTAATGAGATAGAGTAAAATTAGTAGATGCCAGAGCAGCAGCTAGAGAGCAGCCTGCTCCTCCCACCACAGCCCCAGGTTCAAGTAGGTGGAGACGGGGTGTGGAGGACAGCAGGTGTGCAGGTCAGAAGCAGAACTTCCTCAAGCTATCCTTGAAAGTTGGCTCCCAGTGCAG
Seq A exon
GTGAGCGACCTCAGGGGCTGTCCTGGTCTGTGGGCTGGCTTTGGTAGGGGAGTGCCTTTCCTGGGTGAGTGAGGGGACTGCCTGTCCTGGGTGAGGGGAGCCTGCCTTGTGCTTTTTGTATAACAACCCAGTCTCAGGTATGACACCCCTGAGGTGCGGTCTGTGTTTTCTTAGTTACTACCTGTGACCCACTTGTCCCTGTGCTTTGGGGTGCTGGCTGGAGTTACAATTCAGTCTCTGGGCAGGTCATTTGTCCTTTTTCCTCCGTTTCCCTTACTTCAGATGAGCTAGTGCCCCATTTAGCCTGTCCCTAGGAGTCCTAACCTCTGTTTACCATTCTTGAAACACTGGGAGTATTTTCATTCTTGGGGGATATGCCATGAGATACCAAGTCACAGAATTTCGAAGTGCTTGGATTCTCAGGGAACACCCCGGCTTTGCCAAGTTCAGTAGGTAACAACAGCCACTGTGAGGTATGTTCTGAAGCAGAGCTGACCAGGAGCTGCCTAGTGGCTTCTCTGTACATTGGTAGGCTGGGTAGGTCAGGACTCGGAATCCCTGCTGGGCTCCAGAGGAGATACGGGTATAGATGTCTTGAGTACTGTGGAGAATAGCATTCCATGGTCAGCTGCCCAGGTTCATCCGGGGTCAGCTAAAATCTCTCAGATCTCCATTAGAGAAATCCAAGTTTAGGATTTCAAGAAAAATCAGATGTCTTTGTTAAGAAGAATAGAATGCTAGCTGGCCTCTTGAGGGGCCCACACCTGGCCCCTGGATTCCATGTAGCATGGTTCTGAGGCTCCCAGAAAGAAGTCCAGCACTGGGAGACTCTGAAGTCCTGAGTTCAGTCCAGACATGGGACTCTTCATGGGGAATCAAGAGAGCAAGGGTCCAGAGGGAGAGGAAGGGTGATGCCTACGTAGGAGGTCTAGATGGGGCTTCATTAGCCCTTGATAGTGGCACCAGAAATGTCCATCTTGGCTCCACTGGGCTGTACCCTCTGTACTGGCCCCCAGGCTCTGTGACAATACTGGGCTTGCCCAATAAGACTTTGGAAACTGTTCTTGGCCATTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTGGCTGTCCTGGCTACTGATCTAACCTAGGAGTCCCAGATTTGACATCTGAGGAAGGTTGGAACGTGTTAAGGCCCTTCCTCTAGAAGGCTGGAGTTGGAACAGCAGGAGTCTGAGTGTCCACTGCTGTCCACTTCACCCTTGCAGCTCAG
Seq C2 exon
ACCCTCTCACCATGGGACTCTCCTGGAAGGAACGGGTCTTCATGGCTCTGTTGGGAGTTGCAGCAGCCTCTGGCCTCACCATGCTCGTCCTCATCCTGGTGAAGGCAATCAATGTTCTCTTGCCTGCAGACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813:ENSMUST00000044078:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0115012=GDA1_CD39=PU(1.9=19.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCTTCCTCCCTCCACAG
R:
GTGTCTGCAGGCAAGAGAACA
Band lengths:
349-1608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types