HsaINT0058515 @ hg19
Intron Retention
Gene
ENSG00000167880 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:3503]
Coordinates
chr17:74015609-74017644:-
Coord C1 exon
chr17:74017549-74017644
Coord A exon
chr17:74015735-74017548
Coord C2 exon
chr17:74015609-74015734
Length
1814 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TGACCACCCAGTGAACTCAGTTC
3' ss Score
-4.19
Exon sequences
Seq C1 exon
GCCCACCAGGAGGCCCTGAAGATGGAGTGGCAGAACTTCCTGAACCTGTGTATCTGCCAGGAGACCCAGCTGCAGCACGTGGAGGACTACCGCCGG
Seq A exon
GTGAGCCCTCGGGCAGGCGGCAGGGGCGGCAGGGGCGGCAGGGGCGGCAGGGGCGGGAGCACAGCACCCCTGCCCACAGGAGAGGCACTGCACCTCCCAACTAGACAGAGCTGGCAGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGTGGATCACTTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACCAAAATTAGCCAGATGTGGTGGCACGCGCCTGTAATCCGAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGGGCCGAGATTGGTCCACTGCACTCCAGCCTGGGTGACAGAGAGAGACTCCACCTCAAAAATAAAATAAAATAGAGCTGTGTGGTTGCCACTCGGTCCCAGAGGGAAAGAAAGGCATGGGCACATTCTCAACAGGGTGAAGCGGTTCCCAGGGGGGTGAAAATTGGTTCTTACTGGCAGAAAAATATCTTAACTCTTTTTATGCATGAAGTCCAGATCCACATACAGCACCTAAGCTGTATACAGCATATCTGTGGTATTAAAATTTCGTGGGGGCCAGGTGTGGTGGCTCACATCTGTAATTCCAGCACTTTGGGAAGCCGAGCCAGGAGAATTGCTTGACACCAGTAGTTCCAGACCAGCCTGGGCAACATAGCAAGACCCTGTCTCTATACAAATAGATACATCTCTATCAAAATAAATAAATAAATAAAATTTTATGGGGATGAGGTGGGGGGAAATTAAATAAAATATTTCTTAAAAGGCTCTTTAGGAGAATAATAATGAAAAAAAAAACGGTTGAGAAACCCTGATATAATATGCAACTGGGATTTGGGGGCAGATAATGTTTCATACATTTTCCTATAGAACCACAAGACTGTGATCACACACGTTGACAAAAATTCCGTCAAAGCACCTGGAATGCTTCTTTAAAGCACAGCTTCTTCTCCGGGGCTGGGACAAGTGCAGCTCCAATACCCTCTGTCCCAGCAAGAAAGACTTCAGGTGCTGGAGGGAGGCAGGTGACGGTGCCCTTCATTTGTGCAGGAAGGACGAAGACCAAGTGTTTTATGACCCACTTAAAAAAATTAAGTTCAGTGCACAAATAAGACCCCATTTGCAAGAGCACACCAGTGATAAAAGGTCCTGCCGCCTGGGTAGGAAAAAGAAAGACCGACCAGAGTAGGGGAGAGTGACAGTTTAGGTTTAGCTGGTTTAAGTTTAGCTGGTTTAGGTTTATCTGGTTTAAGTTTATCTGGTTTGTGTTTAGCTGGTTTAGGTTTATCTGGTTTAAGTTTATCTGGTTTGTGTTTAGCTGGTTTAGGTTTAGCTGGTTTAGGTTTATCTGGTTTAAGTTTATCTGGTTTGTGTTTAGCTGGTTTAGGTTTAGCTGGTTTAGGTTTATCTGGTTTGTGTTTGGCTGGTTTAGGTTTAGCTGGTTTCGGTTTAGGTGGTTTGTGTTTAGCTGGTTTAGATTTAGCTGGTTTAAGTTTAGCTGGTTTAGGTTTACCTGGCTTAGGTTTTTCTGGTTTAGGTTTAGCTGATTTGTGTTTAGTTGGTTTAGGTTTAGCTGGCTTAGCGGTTACTGGTTTAGTTTAGCTGTTTCACATTTATCTGGTTTGTGTTTAGCTGGTTTGTGTTTAGCTGGTTTAGGTTTAGCTGCTTTGTGTTTAGCTGGCTTAGGTTCAGCTGGTTTGTAGGGTCAGTGGGCAGCAGGTTGCACGAGGCTCTGCCCTTGACCACCCAGTGAACTCAG
Seq C2 exon
TTCCAGGAAGAGGCCGACTCAGTCAGCCAGACCCTGGCGAAGCTCAACTCCAACTTGGATGCCAAGTACAGCCCTGCACCTGGGGGCCCCCCTGGCGCCCCCACAGAGCTGCTGCAACAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167880-EVPL:NM_001988:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.881
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCCCTGAAGATGGAGT
R:
CTGTTGCAGCAGCTCTGTGG
Band lengths:
208-2022
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)