RnoINT0057024 @ rn6
Intron Retention
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105110278-105111793:-
Coord C1 exon
chr10:105111698-105111793
Coord A exon
chr10:105110404-105111697
Coord C2 exon
chr10:105110278-105110403
Length
1294 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TGACCACCCACTGACCTTAGTTC
3' ss Score
4.57
Exon sequences
Seq C1 exon
GCCCACCAGGAGGCCCTCAAAATGGAGTGGCAGAATTTCCTAAACCTGTGCATCTGTCAGGAGAGCCAGCTGCAGCATGTGGAGGACTACCGAAGG
Seq A exon
GTGAGCCTGGGGCCAGGGACCCAGGGTGGTGGCTGGGGAGTGGGGGCAGGGTTCAAGGGCAACATAGCATAGAAGGGAACTGGGGCTTTAGGCCTAAGTCCCTGTGGGGAAACTAATGTCAAGAAGGACATTCTCAGCGGGGTGATTTCACCCCTAGCAAGTGAGTTTTGTTTTATTTTTTCTAATTTTTTAAAATTTACGAATTAATTTTGGGACACAGTCTCACTTAACTCAGGCTGACCTCAAACTCACGATGTAGCTGAGGATGGTGGAGAACTTTAGACCCTCCTAAGTGCTGGCCTTAAGGCATGGGCTACTGTGTGTGCCTTTTTATGCGGTGCTGGGAATTGAACTCAGGGCCTCTCTATAAATGCTACAAACTAGGTTGCATCTCCTGCCCCTGAGTTCTTTTCTTTCTTTTTTCATTATTCTATTTTAAGCTATGGGTACATGCGTATGTCTGTGTGTGTGAATACGTCACATGAGTGCGGGGGCCTGAGAGGCCAGAAGCAGGCAGATCTCTGTGAGTTCAAGGACAGCCTGGTCTACCTAGCAAATGTGAGGCCAACCAAGACTATATAGTAAGACCCCATGTCAAAAAAAAAAAACCCTAATAATAAAAAAAACATAACCGATGGCGTCTAGTGTGGTAACTGTGGCTGAAAGGGACTTGGGGAGCAGAGAACAGGATAGCAAGCTTGAGGCTAGCCTGGGCTACTTTGTGAGACTCTATTGCAAAATTACTCTGGTATAGCTCAGTTCTAGAAAATTTGACTGGAATGCACCAGACCCTTGAGTACAAAGCCAGAATGTTGCCTTATGACACTAAAAGCTATTTTTTTAAGATTTATTTATTTCATGTATGAGTACACTGTCACTGTCTTCATGCACACCATAAGAGGGGATCAGATCCCCATTACAGATGGTTCTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCGCTGAGCCACCTCTCCAGCCCCTAAAAGCTACTTTCAGTGAACCAAAAATGTCCCATTTATGGTCACCCCCATTTAAAAAGATCCCACTGTCTGGGCAGGTGTCTTCGCTTAGCTGGCTTAGATTTAGTCTGTTTTGTTTTGCTTTGTTGTTTAAAGCTGGTTTGAGTGTGGCTGGCCTGGGTTTAGCCTGACTTGAATTTTATTGTAGCGTGAGTTTGACCTGGTCTGTATCCAGCCATTTTGGAGGTTCCCCCCACCCCACCCCCGGCTCTGCCCTTGACCACCCACTGACCTTAG
Seq C2 exon
TTCCAGGAAGAGGCCGACTCAGCCAGCCAGACCCTGGCAAAGCTCAGCTCCAACCTGGACACCAAGTACAGCTTTGGCGCTGGGGACTCCTCTGTCTCCCCAACAGAGCTCCTGCTACAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343:ENSRNOT00000012373:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGGAGGCCCTCAAAATG
R:
AGGAGCTCTGTTGGGGAGAC
Band lengths:
206-1500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]