MmuINT0059585 @ mm9
Intron Retention
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116092232-116093803:-
Coord C1 exon
chr11:116093708-116093803
Coord A exon
chr11:116092358-116093707
Coord C2 exon
chr11:116092232-116092357
Length
1350 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TGACCACCCAGTGACCTTAGTTC
3' ss Score
-2.32
Exon sequences
Seq C1 exon
GTCCACCAGGAGGCCCTCAAGATGGAGTGGCAGAATTTCCTAAACCTTTGCATCTGTCAGGAGAGCCAGCTGCAACGGGTGGAGGACTACCGTAGG
Seq A exon
GTGAGCCTGTGGCGGGGGGTGGGGGGCGTGGGGGGTGGGGGGGTGCAGAGGAGTCGGGGGGCGGGGTTAGAGGGCAACGTAGCACATAAGGGGTGCTGAAGACAGTGCAGAGGCTCTTTATGCCTAAGCCCCTGTAGGGGAATCAAGAATGACCTGGTCGGTCTCACCCCTTACAAGTGGGTTTATTTTTCTAATTTTTAAAATTAATTAATTAGTTTGAGACAGAGTCTCATGTAACCCAGGTTGACCTCAAACTCACGATGTAGCTGAGGCTGACCGTGAACTTCCGACCCTCCTAAGTGCTGGCCTTAAGGCTTGTGCTGCCACGTCTTTTTATGTAGTGCTGGGAATCGAACCCAGGGCCTCTCTATCAACCCTGCAAACTGTGTTGTATCTCCTGCCCCTGAGTTATTTTTCCTTTTTTTATTATTTTATTTTAAGCTATGTGTACATGTGTATGACTGTATGTGAATATGTTACACACACGAGTGTGTGGGTGCCTGGGAGGCCAGAAACGGGTGAATCTGTATGAGTTTGAGGACAGCCTGGTCTATCTAGCAAATTCAAGGCCAACCAAGACTGTATAGTAAGACCCTCATCTCAAAAAACAAAAACAAAAACACAACAACTAATAAAAAAATAACAGCTGGGCGGTGGTGGCACACACCTTTAGTCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAAAGAGAAACCCTGTCTCGGAAAACAAAACAAACAAACAGAACCAGATGGGGTCCAGTGTAGTAACGGTGGCTGGAAGGGCATACACATAACCCAGCACTTGGGGAGCAGAGAGCAGGATGACAAGCTTGAGGCTAGCCTGGGCTACTTAGTGAGACCCTATTGCAAAAACAGAAGATAAAATAACTAGGGGTATTATAGCTCAGTACTAGATTTGACTGGCATGCACCAGACCCTTAAGTACAAAAGCCAGCATATTATCGTATGACAATAAAAGCTATTTTCAGTGAGCCAAAAATGTCCCATGTGTGGACACCCCCTTTTAAAAAGGTCCCACGGTGTGAGTAGATGTAGCTGGTCTTTGTTTAACTGGTTGAGATTTAATCTGTTTTGTTCTGGTTTGGTTTGTTGTTGTTGTTGTTATTGTTGTTGTTTAAAGCTGGTTTGAGTGTAGCTGGCCTGGGATGAGCCTGACTTTATGAAGTTTATCCTAGTATGACTTTAGCCTGGTCCATCTCCAGCTATTTTGCAGGGTCAGTGGGTAGTAGGTTGCCCCCTGGCTCTGCCCTTGACCACCCAGTGACCTTAG
Seq C2 exon
TTCCAGGAAGAGGCGGACTCAGTCAGCCAGACCCTGGCAAAGCTCAGCTCCAACCTGGATACCAAGTACGGCTTTGGCACTGGGGACTCCTCCGGCTCCCCCACAGAGCTCCTGCTACAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282-Evpl:NM_025276:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAGGCCCTCAAGATG
R:
CAGGAGCTCTGTGGGGGAG
Band lengths:
206-1556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: