DreINT0065108 @ danRer10
Intron Retention
Gene
ENSDARG00000019808 | evpla
Description
envoplakin a [Source:ZFIN;Acc:ZDB-GENE-030829-19]
Coordinates
chr6:17966861-17967144:+
Coord C1 exon
chr6:17966861-17966956
Coord A exon
chr6:17966957-17967033
Coord C2 exon
chr6:17967034-17967144
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ATTTACATTCTTCTCTACAGTAC
3' ss Score
7.62
Exon sequences
Seq C1 exon
GCCCAGAGAGACACTGTAAGAAATGAATGGCAGAAGTTTCTGAATCTTTGCATCTGTCAGGAAACCCATCTGGACAATATAGAGGAGTACAAAAAG
Seq A exon
GTAGGTCCTTTTTGCCAAGCAAATTTCTAGTAGAAAAATTGTTTATTAGTAAAGCCTATTTACATTCTTCTCTACAG
Seq C2 exon
TACCAACTGGATGCAGACACCTTGTCTGAGTCTTTGTCTAAGCTTGGCTCCACTGTTGATGCCAAATCTGTCAATGGCAAAACCAGCACTGAAATTCAGATGCAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019808:ENSDART00000143263:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.514
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(23.6=78.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGAGAGACACTGTAAGA
R:
TTGCCATTGACAGATTTGGCA
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]