HsaINT0058525 @ hg19
Intron Retention
Gene
ENSG00000214860 | EVPLL
Description
envoplakin-like [Source:HGNC Symbol;Acc:35236]
Coordinates
chr17:18286806-18291602:+
Coord C1 exon
chr17:18286806-18286901
Coord A exon
chr17:18286902-18291532
Coord C2 exon
chr17:18291533-18291602
Length
4631 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TGTTTTCTTTCTTTCCACAGATT
3' ss Score
13.15
Exon sequences
Seq C1 exon
GCCCACCAGGAGGCCCTGAAGATGGAGTGGCAGAACTTCCTGAACCTGTGCATCTGCCAGGAGACCCAGCTCCAGCACGTGGAGGACTACAGCCGG
Seq A exon
GTGAGCCCTCGGGCAGCGGCAGGGCGGCAGGGCGGCAGGGCGGGAGGTCCCACAGCACACCGGCCCACAGGAGAGGCACTGCACCTCTCAACTAGACAGAGCTGGCAAGTCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCTGGCCGATCACTTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACCAAAATTAGCTAGAGGTGGTGGCACGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGGGCCGAGAATGGTCCACTGCATTCTAGCCTGGGTGACAAAGAGGGACTCCACCTAAAAAATAAAATAAAATAGAGCTGTGTGGTTGCCACTCGGTCCCAGAGGGAAGGAAAGGCATGGGCACATTCTCAACAGGGTGAAGCCGTTCCCAGGGGGGTGAAAATTCGTTCTTAATGGCAGAAAAGTAACTGTTTTTATGCATGAAGTACAGATCCACATACAGCACCTAAGCTGTATACAGCATATCTGTGGTATAAATATTTCATGGGGGCCAGGTGTGGTGGCTCACACCTGTAATTCCAGCACTTTGGGAGGCCGAGCCAGGAGAATTGCTTGACCCCAGTAGTTCCAGACCAGCCTGGGCAACATAGGGAGATCTTGTTTCTATAAAAAATAAAAATAAAAACTAGCCAGGCATGGTGGCTCGTGCCTATTGCTTGAGCCCAGGAGTTTGAGGCTGCAGTGAGCCATGATCACACCACTGCACTCCCGCCTGGGTGACAGACTGTGACTCTGTCTTAAAAAAAAAAAAATCCTGGTGCAATACCTCATGCCTGCAATCCTACCACTTTGGGAGGCCGAGGCGGGTGGATCACTTGAGCCCAGGAGTTGGAGACCAGCCTGGGCAACATGACGAAATCCTGTCTCTACAAAAAATATACAAAAATTATCTGGATGTAGTGGTGCATGCCTGTAGTCAGAGCTACTTGGGAGGCTGAGGTGAGAGGATCACTTGAGCCCGGGAAGTCGAGGCTGCAGTGAGCTGTGATCACTCCACTGCACTCTAGCCTGGGTGACAGAGCAAGACCCTGTCTGTTAAAACAAAACAGAATAGAGCTGGGGCTTCCTTTTCCAGTGGGTGTGGTGCAGGGGGCACTGGGCCTCCCTTGGACCACCCGGTTCTCTGGGGCCCAGCCTCAGCTCTCTGTGGATGGATTGGGTGGTGCTCCTCCCACTCACTGGCTTCAGCTCGTCTGCAGAGGAGGCAGCAGCGAAAGATGGGTAGAAAGAGATGGGGGAGAGACAGAGGAGGCTGAGAGGGAGAGGAGGATGGAGAGAGCAGAGAGAGAGAAACAGAGATGGGGAAAGGGGCAAGAGATGACAAGAGAGACAGAGAAGCCAGAGAGGCAGAGGGGGAGAAAGGGAGAGAGGGAGAGAGAGACAGAGCAGGAGGTCGGGGCACTCTGGGTCCCAGTTTCCGGTGCAGTTGTAGGTCACCATCACCTAACTGCAGGTGCAATAAAGCCCTCGTGCCTGCTGCTCGCAGCCCCTGAGAGTCCTTCCTCCTGGAGAATAAAACCTTTGAGGGCTGCCCTTCCTCACTGGATTTTGGTTGTTTCTAATGAACTGAGTCATCCTGTCTATCACCTTCCTGGGCTCATGGCTCCACTGAACGCTGCCCCCTCGGTTCGGGAGGACCAGTGGTGCCCCCATCTCACCAGGCTCCCAAGGAAGCTTGTGACCTTGGCTTGGGCCCAAAGTAGCCGGGTACCCACTGGGGCTCTGCTTCTCCCTTCACTAAGAGAAGAAAGAGACCAAAGAATGGTCTGCACAGAGGGCACCTGTGCAAACACCCAGGGAACCAGGGAGTTGAGCCGTCTTCATTTCCTAACAGATACATTCCCTTCTGTGCCTCCTTAATGAGGGCATGAAGCACAGTATGCGTGTGTCCAGCTGTGTGCAAAGGCATGTGTGTGTGCATGTGTGTTGTGGGAGCATGCAGTAGGCAGCAAGGAAAGGGCAGCTCCTGCTCAAAGCTGCAAGTCTCTCTGAAGGAAAGATCAAGATTCCCTGGACCACAGCAGGACAGTGTTTTCATTTGCATCCATTTTTATTAGCATTTAAACCTGTATCTTGAGTAGCATATAAACTTTAAGTTGGTTAACTGTTCTTACAAGCATTTACACAGTAAGATAAACATATGATAATATACACTGAAATTATGCACCCTGCACCCCGCCGTCCCCACCCTGGCCAGAACTATCTTGCAAACCTACACCCAGCAAAAGATCCCATAGTGCACTTTGGGAGGTATAGACAGGAAGCCTGAGTCTCCATCGCTCATTCCATCTTTTCACCAGCTGTGGGCTACCAGGCTGCATTGGTTTGCTAGGGCTTCCTTAAAGTACCACAGACTGGGCAGCTTCAGCAACAGAATCTCACTGTCTCACAGTCCTGGAGGCTGTAGGTCCAAGATCAAGGTGTCGGCAGGGAAAGTCCCTTTCCAGGGCGGTGCGGGAAGGCTCTGTTCCAGGTCTCTCTCCTGGCGTGTAGGTGGCCTTCCCGGTGTCTCTTCACCTGGTCTTCCCTCTATGCATGTCTCTGTGTCCAAATTTGCCCTTTTATAAGGACATCAGTCATATTGAATTGGGCACCCCCTACTGATCTCATTTTTCATTTTAACTTATTTCCATAAGACGCTGTCTCCAAATAAGATCACATTCTCAGGCACTGGGGCTAAGGACATCAACATAGGAATTTCAGGGGACAAATTCAACCCACCACATAGGCCCTCCCTGAGGCCACCTCTGCGTCATCTTTGTCTACAGGCAAGTTGGCATCTAAAAAGTGTCTGCCCAAGACATGCGTCTGGCCCATGGTACAGCCAGTCCACACGGCCAATGGTGAAATCCGGGTGGCATTGTTTCCTCACCGCCATGCCTCATGCAAGCAGCTGCCTTCTTATAACGGTGGACACAAATCCCAGCACTGGTGCAGTTGCTTGCCGGCTGTGGGTGAAGTAGCCCCATGTCAGTGTGCTGCAAAGATGCAGCTTAGAATGTTACGGCTTGTGTGAAAGATACGCAGATTTCTATTCCTTCCAATCTGTGGTTTCAAGTTCTGCTTGAACCCAAGGGGCTCTATAGGGTGCTTCTGGAACAGCCGGGGTGTTAGGGGTGCTGAAAAGGTGTTAGGGTGCCTAGGCTCAACCCCAGCTTCAATCACACAAATAATCTTGTTGACATGATTTTTGGTTAATTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCCTGATCTCTGCTCACTGCAAGCTCCACCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCCCGCCACCACGCATGGCTAATTTTTTTTTTTGTATTTTTAGTAGAGACGGGCTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCATGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCTGGCCTGGTCAGTTTTTTAATTGATCTTTTGTATAATTTTTTTGTTTAAGAAAGGGATCCTTTGGCAGAAAGAAAATCTGAAACTCTAAATACTGTCCATTTTATCCATATATTGGTCATACCCCCAAAATATATCCTGATTCCAGCCATTTGTCATGACCGCTTTAATCTGAGCTCCCTTCATTTTTCACCTGGATTACTGTACCAGCCTCCCCAATGGCCTCCCTGGTGCCACCTGGCCCCTCCCCAGGGCTCAGCAAGATTTTTCTGCAAAGGACCTGGTAGTAAGCATCTTGGGCTTCGTGGACCCTGTGGTCTTTGTTGCACCTACTCAGCAGTTACTCAGCTTTCCACTGCAGCCCCAAAGCAGCCCCAGACAAGAAGTGAACACAGGGGAGGAACTGTGGCTCCAATAAACCTTTATTCACAGTAGGAGGGGGGCTTCATCTGGATTGTGGGCCATAGTTTGCCCACCCCTGCCTGACCTCATGACAACACTGACCTTCGTATTTATGCCTCTTAAAAACATGTGTAAGCCGAGTGCAGTGGCTCATGCCTGTAATCCCAACACTCTGAGAGGCCGAGGCTGGAGGATTGCCTGGGGGCAGGAGGTCCAGACCAGCCTGGATAACACGGCGAGATCCTGTCTCTACAAGAAACCATTTCAAAAGCAGCCAGGCATGGGGGCCCACACATGTAGTCCCAGCTATTCAGGAGGCTGAGGTGGGGAGGATTGCTTGAGCCTGGGAAGTCAAGGCTGTAGTGAGCTGTTTTGGGCCACTGCACTTCAGCCTGGGTGATGGAGCAAGACCCTGTCTCTCTCTCTCTCTCTCCATATATATATATATACATATATATGTATATATATATAAAATTTATTTATAGTGTGTGTAATGGTTGTCTACAAGGCACACCTTTAATTAATCACAGCCAACCCTCAAATAATACCCATAGTGTAGGACCCTTACAACGTTACACTCCCAACTCTTCTCCCCACCCATCTTTTGTTTTCTTTCTTTCCACAG
Seq C2 exon
ATTCTGTGTCCATCTTCCTCTCCTCATTGACTCTGCATGAAGGGGATTTCTGGTGGAGTAAGGGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214860-EVPLL:NM_001145127:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(25.0=78.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)