HsaINT0058528 @ hg19
Intron Retention
Gene
ENSG00000174279 | EVX2
Description
even-skipped homeobox 2 [Source:HGNC Symbol;Acc:3507]
Coordinates
chr2:176946906-176948690:-
Coord C1 exon
chr2:176948078-176948690
Coord A exon
chr2:176947178-176948077
Coord C2 exon
chr2:176946906-176947177
Length
900 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
GTTGGTCGTTTGTTTGCCAGGGT
3' ss Score
5.87
Exon sequences
Seq C1 exon
AGGATGTATGGGTCATTTTGACCAGTCATTCCCTCGCTCTGGCATCCCACAATTTTTCCGCCTCCCTCCGAAAGCGATAATAATATTTAGAGGCGTTCGCTGGGGCTGAATGAGAATTAGCCCTAGGCGCAGCCTATCATTAGGACGGGACAGCAGGGCCACTGTGACATTTTTAAGAAAGCTGAGATGATGGAAAGAATAAGAAAAGAGATGATTCTGATGGAGAGAGGGCTGCACAGCCCTACGGCGGGCAAGAGATTCTCCAATTTGTCCAACTCGGCTGGCAATGCTGTGCTCGAGGCCCTGGAAAATTCGCAGCACCCGGCTCGCCTAAGCCCGCGCCTGCCGTCTGCCCCCCTGCACAGCGCTCTGGGAGAACTCCCCGCCAAGGGCAAATTCGAAATAGACACTTTGTTCAACCTGCAGCACACGGGCAGCGAAAGCACCGTCTCCTCCGAAATCTCCTCCGCCGCCGAGAGCCGCAAGAAGCCGGGCCATTATTCAGAGGCGGCCGCTGAGGCCGACATGAGCAGCGACGTGGAGGTGGGCTGCTCCGCGCTTCGCTCCCCCGGGGGCCTCGGCGCCGCTCAGCTTAAGGAAAACAATGGCAAAG
Seq A exon
GTAACCGCGCCGGCCGCACCGCGCTCTCCAGTCCCATCCTCTTTGCTCCTCCGCGGCCCCCGCCAGCCTTTCCCGGTGCCTTTTCCCCTCTCAGACCCTCCACAGGCAAGCTACACCGAGCTAGCACGGGCGGGGGCGGGACGCATGTCTGGGACCGTGCCTTCCAGTTCTGCTCCTTGAGCTTTCCCGCCAGGCTCAGGCCTGCGGAGCCTGGAACACCAGGCCCACCCGCCCTCGCTCCTGAGTCCGAGAAAATGTTTCTGCGCTCGTGTCTAAGAGCCCGAGCGAGCCGGTAGACCCCTAGTCAGCAGCCGAGTTGCTTTTGGGAAAGGTACCCTGGGCAACTACTCTGAACTCCCCTGCCCCTGTGCCCTCAGGGCTGGAGGGGGCATTCTTCTGGGTAAGTCGGAGGAAGCCTCGCCGGCGTCTCTGTTTAGGTCAGCGGGAGAAAGAGTTGAAAAGTATATTTCACCCCCTATTGGCTTGGGTTTGAGCTACTGCTGTGTTGGAACTCTTAAAATATTTGAAACCCCGAAGACTCAGATAAAGGTTAGAGGCCGTATAAAAAGCTGCCCTGCGGTCTCCAGACCATGGGAAACCCAGAGCTTCCCAAACTGCGCCCAGAGGTAGGCATTTTCCCTCGGCCACTTTTCCTCCTTGGTTGAAAATTTCTAATTATTAAAAAAGAAATCTCCTAATTCCGTTTCTATTATTTGCTTATGAAGGGCTCCCCAAACTTTATTGATTCCATTAACGGCAGCAATTTGTAAGCATGACAGACCCCATCAATTCCGGCAGCGACTCTCCTTCCTGACGGGGCTTCCCCGATCCGCGCGCAGCGCCAGCGCCGGGCTGTTGGTCCTACAGCCACTCATGCGCTGTTGGTCGTTTGTTTGCCAG
Seq C2 exon
GGTACGCAGAGAGCGGCTCGGCTGCCGGCACCACGACGTCGGCGTCGGGCTCAGGCCTCGGAAGCCTGCATGGAGGCAGCGGAGGCAGCGGCGGGAGCGCGGCGCTGGGTGGCTCCGGCTCTGGCGCGGATCAAGTGCGGCGCTACCGTACGGCGTTCACCCGCGAGCAGATCGCGCGCCTGGAGAAGGAGTTCTACCGGGAGAACTATGTGTCGCGGCCCCGCCGGTGCGAGCTGGCCGCGGCACTCAACCTGCCCGAAACCACCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174279-EVX2:NM_001080458:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=NA C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(77.2=48.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCGGGCCATTATTCAGAG
R:
CGCGACACATAGTTCTCCCG
Band lengths:
344-1244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)