HsaINT0059126 @ hg19
Intron Retention
Gene
ENSG00000131187 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:3530]
Coordinates
chr5:176832736-176833062:-
Coord C1 exon
chr5:176832963-176833062
Coord A exon
chr5:176832807-176832962
Coord C2 exon
chr5:176832736-176832806
Length
156 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
AGCCTTGTCTCTTTCTACAGGTG
3' ss Score
11.15
Exon sequences
Seq C1 exon
TTCTCACTGTCACCGGGGAGCCCTGCCACTTCCCCTTCCAGTACCACCGGCAGCTGTACCACAAATGTACCCACAAGGGCCGGCCAGGCCCTCAGCCCTG
Seq A exon
GTAAGACTACGCAGAGGAGTTGGAGCAGGGGCCTGGGAGACATGTACCCTGCCTGTCCTTCTGTCCAAGGAACTCTGCTTGGAGAGAGGGGACTGTGATAGGGCAGGGTGGGCCAGGCCCCTGGGTAGAGCAGGGAAGCCTTGTCTCTTTCTACAG
Seq C2 exon
GTGTGCTACCACCCCCAACTTTGATCAGGACCAGCGATGGGGATACTGTTTGGAGCCCAAGAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131187-F12:NM_000505:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=PU(59.5=73.5)
A:
NA
C2:
PF0004014=fn2=PD(38.1=64.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCACTGTCACCGGGGA
R:
CTTTCACTTTCTTGGGCTCCA
Band lengths:
171-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)