BtaINT0058881 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40261716-40262659:-
Coord C1 exon
chr7:40262560-40262659
Coord A exon
chr7:40261787-40262559
Coord C2 exon
chr7:40261716-40261786
Length
773 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
AGCTTTCTCTCTTTCTACAGGTG
3' ss Score
12.18
Exon sequences
Seq C1 exon
TTCTCACTGTCACCGGGGAACCCTGCCACTTCCCCTTCCAGTACCACCGGCAGCTGCATCATAAATGCACCCACAGAGGCCGGCCAGGCCCCCGACCTTG
Seq A exon
GTAAGACTACCCAGGAAGGGTTGGAGCAGGGGTCTTCTGTGGACTCTGCCCACCCTTCTGTCCAGGGAACCCTGCTTGAAGAGAGGGGATTGTGATAGGGGAGGTGAGAGTAGCCCCTTGGGCAAAGTGATTCAGATATATATATATATATATACATACATACATACATACATACATGGGCTGCCCAAGTGGCTTAGCTGGTAAAGAATCTGCCTGCAATGCAGGAGCCTGGGTTCGATCCTTGGGTTGGGAAGATCCCCTGGAGAAGGGAAAGGCTACCCACTCCAGTATTCCAGTATTCTGGCCTGGAGAATACATATGTGTGTGTGTGTGTGTGTATATGTTATTGTAAGACATTGAAAACAATTACTTGTGTTATACAGTAAATCCTTGTCGCTTATTTATTTCATGTATAGTCGTTTCTCTCCATTAATCTCATATTCCTAATTTAGCCCCTCCCTTTCCACTTTGGTAACTGTAAGTTTGTTTTCTATGTCTGTGAGTCTGTTTCTATTTTGTATATGGATTCACTTGTATTATTGTTTAGATTCCACATATAAGTGATATCATATAATATTTATCTTTATCTGGCTTACTTCACTTAGTATACTAATTCCCTAGGTTCATCCATGTTGCTGCAAATGGCAATATTTTATTCTTTTGTTATGGCTGAGTAATATTCCATTGTGTATGTACCACCTCTTCTTCAACCACTCATCTGTTGATGGGCACTTGGGTCACTTCCACATCTTAAGCTTTCTCTCTTTCTACAG
Seq C2 exon
GTGTGCTACTACCCCCAACTTTGAGAAGGACCAACGATGGGCATACTGCCTGGAGCCCAAGAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872:ENSBTAT00000025122:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0004014=fn2=PU(59.5=73.5)
A:
NA
C2:
PF0004014=fn2=PD(38.1=64.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]