MmuINT0060100 @ mm10
Intron Retention
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55422406-55422772:-
Coord C1 exon
chr13:55422673-55422772
Coord A exon
chr13:55422477-55422672
Coord C2 exon
chr13:55422406-55422476
Length
196 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
AAACCTCATCTATCCCCCAGGTG
3' ss Score
9.12
Exon sequences
Seq C1 exon
TTCTCACTGTGGATGGGAGGCTCTGCCATTTTCCCTTTCAGTACCACCGTCAGCTACACCACAAATGCATCCACAAAAGGCGGCCAGGCTCCCGCCCCTG
Seq A exon
GTAAGACATTTTCTAATAGGGGTTGGGGGAGGGGGCTGGATGAAATGGACTCTGTCTAGCTATCTAAGCATCGTGTTTGGTCAAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGAAGCAAGGCTAGCCTAGCCAGCCTCAGGCACTGCAGGGAAACCTCATCTATCCCCCAG
Seq C2 exon
GTGTGCTACCACCCCCAACTTTGATGAAGATCAGCAATGGGGATACTGCTTGGAGCCCAAGAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492:ENSMUST00000021948:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=PU(59.5=73.5)
A:
NA
C2:
PF0004014=fn2=PD(38.1=64.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCACTGTGGATGGGAGGC
R:
CTTTCACTTTCTTGGGCTCCA
Band lengths:
171-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types