RnoINT0057477 @ rn6
Intron Retention
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9739456-9739811:+
Coord C1 exon
chr17:9739456-9739555
Coord A exon
chr17:9739556-9739740
Coord C2 exon
chr17:9739741-9739811
Length
185 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
AAACCTCATCTCTTCCCCAGGTG
3' ss Score
9.71
Exon sequences
Seq C1 exon
TTCTCACTGTGGACGGGAAGCTCTGCCACTTTCCCTTTCAGTACCACCGTCGCCTGTACCACAAATGCATCCACAAAGGACAGCCAGGCTCCAGGCCCTG
Seq A exon
GTAAGAACTTGTAATAGGGGTTGGGGGAGGGGCCTGGCTGTCTGAGAATCAATCGTGTTTGGGCAAAAGGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTCGAAGCAGGGCTAGCCTAGCCAGCCTCAGGCAGTGCAGAGAAACCTCATCTCTTCCCCAG
Seq C2 exon
GTGTGCTACCACCCCCAACTTTGACGAGGACCAGCAATGGGGATACTGCTTGGAGCCCAAGAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139:ENSRNOT00000066586:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=PU(59.5=73.5)
A:
NA
C2:
PF0004014=fn2=PD(38.1=64.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCACTGTGGACGGGAAGC
R:
CTTTCACTTTCTTGGGCTCCA
Band lengths:
171-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]