HsaINT0062147 @ hg19
Intron Retention
Gene
ENSG00000138399 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:26150]
Coordinates
chr2:170393737-170394651:-
Coord C1 exon
chr2:170394523-170394651
Coord A exon
chr2:170393851-170394522
Coord C2 exon
chr2:170393737-170393850
Length
672 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
TTATTTATTTTTTTATAAAGGTA
3' ss Score
7.98
Exon sequences
Seq C1 exon
TTTTATCTCCATCTCGAAGTGCAAGAGTCCAGTTTCATCTTATGGAGTTAAATAGATCAGTCTGCTTGGAATGCCCTGAGTTTCAGATTCCATGGTTTCATGACCGCTTCTGTCAACAATATAATAAAG
Seq A exon
GTTTGAGTTTTCTTTTAGTCAGATAGCAAAGTTTGATTCTAAAGTAAATTATTAGGTAGTACATTGTTAATCTTGTTATACTTAAACATGACACGAGCCTTCCCAAGAGTGCCATGACCTGTTTAATATTTTATATGAGATATTGTAGGTGAAACATTATAAGAATTTCTTCATATTTGGGACATAACCCTCCTAGTTGAGAGCAAAGAACTTGTATTGAATTTAGTGTCATTATATAAGACACTACATTGAAGCTCTTATTGAAATTATTAATCTTTATTTTTCAGTTTGTAGAACTGGGATGATTTTCATTAAAAAACTGATTAAGTCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAAAGGCGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTAACAAAAATACAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACTGGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGCGCCGTTGCATTCCAGCCTGGGCAACAAGAGCGAAAACTCCGTCTCAAAGGAAAAAAAAAAAGAAAAAAAAGATTAAGTAGACTAATTATTTATTTTTTTATAAAG
Seq C2 exon
GTATTGGTGGCATGGATGGAACACAACAGCAGATTTTTAAAATGTTAGCAGAGGTACTAGGAGGAATCAATTGTGTAAAAGCCTCGGTTCTTACGCCTTATTACCACAAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138399-FASTKD1:NM_024622:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083687=FAST_2=PU(40.2=79.5)
A:
NA
C2:
PF083687=FAST_2=FE(43.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATCTCGAAGTGCAAGAG
R:
CTACTTTGTGGTAATAAGGCGTAAGA
Band lengths:
238-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)