BtaINT0060806 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010743 | FASTKD1
Description
Bos taurus FAST kinase domains 1 (FASTKD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102031]
Coordinates
chr2:26769304-26769915:+
Coord C1 exon
chr2:26769304-26769435
Coord A exon
chr2:26769436-26769801
Coord C2 exon
chr2:26769802-26769915
Length
366 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
ACTGTTTTTATTTCATGAAGATT
3' ss Score
4.89
Exon sequences
Seq C1 exon
TTATATATTCGTCTCTAAATATGAAGATCCAATTTCGTCTTATGGAATTAAATAGAGCAGTCTGCTTGGAATGTCCTGAATATCAGATTCCGTGGTTTCATGACCGCTTCTGTCAACAACACTATAATAAAG
Seq A exon
GTTTGAGTTTTCTTTGGGTCAGAAAGTAAAGTTTAATTCTAAAGCACATTATTAGGTAGTGCACGGTTTTTATTGTTGAACCTATCATGACACCAGAATTCCAAGAGTGCCATAACTTGTTTAATGGAAACATTTTGTAGATGAAATTTGTGTTATAAAAATTTCTTAATATTTAGGACACTAAACCTCTTTTGGGAGAGAGCCAAAGAACTTGTATTGAATTTAATGTCATTGCATATGGTATTATTAGTACAGCAAGGCTCTTGTTGGAAATATTAATCTTTATTTTTTAGTTTGTAGATGTGGAATGATTTTCGTTCAAAAACTGATTATTTTAAGTGAACTAACTGTTTTTATTTCATGAAG
Seq C2 exon
ATTTTGGCAGCATGAATGGAGCACAACAGCAGATTTATAAAATGTTAGCAGAGGTACTGGGAGGAATCAATTTTGTGAAAGCCTCCGTTCTTACACCTTATTACTACACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010743:ENSBTAT00000055855:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083687=FAST_2=PU(40.9=80.0)
A:
NA
C2:
PF083687=FAST_2=FE(43.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGATCCAATTTCGTCTTATGGA
R:
TGTGTAGTAATAAGGTGTAAGAACGG
Band lengths:
222-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]