RnoINT0059305 @ rn6
Intron Retention
Gene
ENSRNOG00000024335 | Fastkd1
Description
FAST kinase domains 1 [Source:RGD Symbol;Acc:1563531]
Coordinates
chr3:55933344-55934089:-
Coord C1 exon
chr3:55933958-55934089
Coord A exon
chr3:55933458-55933957
Coord C2 exon
chr3:55933344-55933457
Length
500 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
TTTTTATAATTTTTCCTAAGATA
3' ss Score
6.02
Exon sequences
Seq C1 exon
TTTTACCTTCAAGTCTCAGTGCAAGGATCCAGTTCCGCCTTATGGAGTTAAATAGAGCCGTCTGCTTGGAGTGCCCCGAGCTGCAGGTCCCGTGGTTTCATGACCGCTTTTGTCAGCGACAGTTTAACAAAG
Seq A exon
GTTTGAGCTTTCTTATGTAAGAGTACAGTTAATTCCAGAACAGATTATTAGGTAATAGACTATTATTAACACTGTAAAGTCTAAATATGTCTAGTTTCCAAGAGGGACGATGGCTTGTTGCATACTTTTGTAAATGGGGTTCATTTTACAGGAGTTTAGCTGGGACACTGGAGCACTTGGGTAAGCGCCTGTCTCCTTTGACCGTAGTGTTCCTCCACATGGATAGCACTAGGCTCGCACTGTGTCTGTGCACTTCTTGTGTGTGCCTGTGGTTGCTCACGTGGGCGTGCGTGGAGCACCACAGGCTGCCTTCTAGGGTCAGTTCTCTCCCTCCATCTTTACCTGGGCTCTGGGGATCAAACCCAGATCCTCAGGATTGGGAGGTGAGCCCTCTTCTGAACCTGCGGAGTCACTCGCCAGCCCCGAGGCTCCGTGTAAAAATGTCTGTTTTTTACTTTGTCAGATTAGGATGCCTTTTAATTTTTATAATTTTTCCTAAG
Seq C2 exon
ATACCGGTGTTATGAATGGAGCGCAACAACAGATCTATAAAATGTTAGCAGAGGTCCTGGGAGGACACCGATATGTAAAGCCTTCGACTCTTTCACCATATTACCACACAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024335:ENSRNOT00000036585:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083687=FAST_2=PU(40.9=80.0)
A:
NA
C2:
PF083687=FAST_2=FE(43.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCAAGTCTCAGTGCAAGG
R:
TGTGTGGTAATATGGTGAAAGAGTCG
Band lengths:
238-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]