GgaINT0046206 @ galGal3
Intron Retention
Gene
ENSGALG00000009841 | FASTKD1
Description
NA
Coordinates
chr7:20117541-20118792:+
Coord C1 exon
chr7:20117541-20117672
Coord A exon
chr7:20117673-20118678
Coord C2 exon
chr7:20118679-20118792
Length
1006 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTTTATTTTGTCTTTGTAGGCA
3' ss Score
10.52
Exon sequences
Seq C1 exon
TCCTGTCTGATACCTTAAGGCAGAGGGTCCGCTCACGGCTTATGAAACTGAACAGAGCAGTCTGTCTGGAATGTCCGGAGTTTCACATCCCTTGGTTTCATGAGCAGTATTTCCAGCGTGTCTTGTGTAAAG
Seq A exon
GTGAGTCACTGAGGAGAGCTGCCCTTGTTATTATGATAGTCTGTTTTCAACAGTGTGCTAGGCACTTCTAAAACTGTTGTGCTGACACTAGCACACAACAGAAGCTTGGAAAGGTATGTCCCATTGTACACTGAAACGATGTTCTTCAAAAGTGTGAGCACTTAGTAGGAGCAAAATAGCAAGGCAGTTCTTCCCAGGAGAACTGATGTAGTGGAGAGGAGGTATTAATAAGTAAGAAATATGATTTAAACAAAATAGAGATGGTATGTATGACATGGAGGATGGTGTAAGAATTGGGATCATCAGGATTGTCTACTGGAGGAGATGCTGTGTTTTCAGAATGGAACACTTTGATGACTTAACCCTTAGGAGGCTAAACTGCTGTCATCTTCTTTGAAAGAGTCAAGGTCCATCAAGGGTGTGAGATGGAGTGGTCGAGTGTTCAGCCTCGTAGATGTAGCAGCTGAGATCTTTCAGAACAGCAACGATGTCAGGAAGTCTAGCTGATGCAAACACTATGTCTCCTCCATTAATTCTTACGGTATTAATTCTGCTTTATTATCTGTCAGACTAATCTGCTTTCTAATCTATGAGACTGAAGATGTTTAATGGAGCAAGGTATTAAGCAACCTGCAACACGTGGAGAAGTAACAGCAAACTATGCCTGTAATGGATGCAAAATTATTAAGTACTTATTTAACAGTCTAATCATGATTAAAAACAAAATTCAACTGATGAAACCTGCAACCAAAGTGCTTGTTGTATTTGAGTGGGAAAACTGGGATGGAAATTCTGGATGTGCAGTTTGTGCTTAGTAGGCACCTGTCATTTTCTACCCAAAAGCTGATGATGTGAGCTCTGAATTATGATGGAATAACACCAAGGATCACTGGGAAAGCTTTAATTTATTAGGCTGGCTATCAAAAGTGCGATGTCACAAGGTACTGTTTCAGAAGTTCAGCTATTGTGTGTTTTGACTCACTAATTCTTTATTTTGTCTTTGTAG
Seq C2 exon
GCATTCGCCGAATAAATCCGCTGCGACAGCATGTTCACAGGATGCTGGCAGAGATCTTAGGAGGGAGCCATTATGCAAGAGTGTCTGTTCTCACACCGTACTACTATGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841:ENSGALT00000016000:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083687=FAST_2=PU(40.9=80.0)
A:
NA
C2:
PF083687=FAST_2=FE(43.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTCTGATACCTTAAGGCAGA
R:
CTATTTCATAGTAGTACGGTGTGAGA
Band lengths:
246-1252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]