HsaINT1013369 @ hg38
Intron Retention
Gene
ENSG00000138399 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:HGNC:26150]
Coordinates
chr2:169537227-169538141:-
Coord C1 exon
chr2:169538013-169538141
Coord A exon
chr2:169537341-169538012
Coord C2 exon
chr2:169537227-169537340
Length
672 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
TTATTTATTTTTTTATAAAGGTA
3' ss Score
7.98
Exon sequences
Seq C1 exon
TTTTATCTCCATCTCGAAGTGCAAGAGTCCAGTTTCATCTTATGGAGTTAAATAGATCAGTCTGCTTGGAATGCCCTGAGTTTCAGATTCCATGGTTTCATGACCGCTTCTGTCAACAATATAATAAAG
Seq A exon
GTTTGAGTTTTCTTTTAGTCAGATAGCAAAGTTTGATTCTAAAGTAAATTATTAGGTAGTACATTGTTAATCTTGTTATACTTAAACATGACACGAGCCTTCCCAAGAGTGCCATGACCTGTTTAATATTTTATATGAGATATTGTAGGTGAAACATTATAAGAATTTCTTCATATTTGGGACATAACCCTCCTAGTTGAGAGCAAAGAACTTGTATTGAATTTAGTGTCATTATATAAGACACTACATTGAAGCTCTTATTGAAATTATTAATCTTTATTTTTCAGTTTGTAGAACTGGGATGATTTTCATTAAAAAACTGATTAAGTCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAAAGGCGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTAACAAAAATACAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACTGGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGCGCCGTTGCATTCCAGCCTGGGCAACAAGAGCGAAAACTCCGTCTCAAAGGAAAAAAAAAAAGAAAAAAAAGATTAAGTAGACTAATTATTTATTTTTTTATAAAG
Seq C2 exon
GTATTGGTGGCATGGATGGAACACAACAGCAGATTTTTAAAATGTTAGCAGAGGTACTAGGAGGAATCAATTGTGTAAAAGCCTCGGTTCTTACGCCTTATTACCACAAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138399:ENST00000453153:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083687=FAST_2=PU(40.2=79.5)
A:
NA
C2:
PF083687=FAST_2=FE(43.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATCTCGAAGTGCAAGAG
R:
CTACTTTGTGGTAATAAGGCGTAAGA
Band lengths:
238-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains