HsaINT0063001 @ hg19
Intron Retention
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:1211]
Coordinates
chr17:18647326-18651418:+
Coord C1 exon
chr17:18647326-18648062
Coord A exon
chr17:18648063-18651253
Coord C2 exon
chr17:18651254-18651418
Length
3191 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CTTGGTCTTCTGTGTTTCAGGGC
3' ss Score
11.13
Exon sequences
Seq C1 exon
ACGGTAAAGCCATGTTTCCAAGGAGGTCTGTACAAAAAGCCAGACTTCTGCTGGCAGTTACTGAGAGAGATAGGCTTTCCATCCATGGCAGCCATTTACTTTTGCTCTGGGAGACGTTTGTAATAGAAAAGGCACAACTGGGGTATTTATTCATTCCCCCCGTTCCTCTAGTGTTTGGTGGCGTTGCCGTTGCAAGTGCGCAGGGCTAAAATGGACTGGTTATCTTAGGATCATGGAAAACCTGGAATCAAGGCTCAAGAATGCCCCCTATTTTCGTTGTGAGAAGGGAACCGATTCCATCCCTCTATGCCGGAAGTGTGAGACGTGTGTCTTAGCCTGGAAGATCTTCTCTACCAAAGAGTGGTTCTGCAGGATCAATGACATATCACAGAGGAGGTTTCTAGTTGGCATTCTGAAGCAGTTAAATAGCTTATATTTGTTACACTATTTCCAAAATATCCTTCAGACCACACAGGGAAAGGATTTCATCTATAACAGGTCCCGGATCAACCTCAGCAAGAAAGAGGGGAAAGTTGTGAAGTCCTCCTTGAACCAAATGTTGGATAAAACAGTAGAACAGAAGATGAAAGAGATCTTGTACTGGTTTGCGAACAGCACCCAGTGGACCAAGGCGAATTATACTCTCTTACTGCTGCAGATGTGCAACCCCAAATTACTGCTCACTGCTGCCAATGTGATCAGAGTCCTGTTTCTGAGAGAGGAGAACAATATCTCAG
Seq A exon
GTAAACAAGGCCACAGGCAGAGACTAGAGGGCCCCCGAAGACCAGAAGGCAAGGCTTCAGAAATCTGTAAGGAACTGCAGTTGTAGACAACATAGGTAGACAGAGATTGCACAGAACTCAGCATAGGTTTTTTGAACTGACACCTTGTCCTGACACCCGATCCTGTTTACCAAAGGAGAAATGACTGAGTGTAACTTCCTTCTTGAAAATGATCAATGCAGGAGGAAGTACACAACTTTTAACTCACAAGCATTTATCATGGATTTCTGCATCTCATAGGCCCAGAAATGGCTGGTCCCTGCCCCTGACCCCTTAATGCTGGTGTCGTTCCTGCTTTAGGGATTGGACTGAGCTCGAGAGGGTTGTAAAGGGGAAGCTTTTGTTTTTCTCTTCAGCTGCCCTGCACAGAAACCAGACCAAGAAGTCAAAACTTAGGGCTTTTTTTTTTTTTTTCATTCACTCTACCATGCTCCTTGCTTATCCATGAAATGAAACCTTAAAGTAGAGTTTCTCCAAGGCTGGAGATAGCTTAAGGGCCAAATAAGTCTAGGGTGGTAGTTCTCCAGCTGTGGCTTGTATCAGGATCTCCAGCAGGACCTGTTAAAACAAGCTCCTCCCCCAGAACTTCGGACTCAGCAGGTCTGAGGTGGGCCCAGGATTCTGTATGTCTTTTCTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGAAACCTCCACCTGCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCGTGCCACCATGTCCTAATTTTTTTGTATTTTTTAGTAGAGATGGGGTTTCACCATGCTGGCCAGGCTGGTCTCGGACTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACTCGACCAGGGATTCTGTATTTCTAACAAGTTTCCAGCTAGTGCTGATGTTGCTGGTCTGGGGATCTGTCTTTGAGAATCACAGGCCTAGGGTGTTGGAGAATCTTGGAAGTGTTTGGCCAGATAGTTCAGGGAAGCAGAAGAAACAATAAGGGTGGTGTCTGTTTTGCTTTGCTATAAAGGAATACCTGAGGCTAAGTAATTTATAAGGAAATTTCTAAGGAAAAGAGTTTTATTTGGCTCACAGTTCTGAAGACTGTACCAGAAGCATGGCACCAGCATCTCTTTCTGGTGAGGGCTTCAGGAAGCTTCCACTTATGGTGGAATGCAAGGGAAATCAATGTATCATGAGGCAAGAGAAGTAGCAAGAGAAGGGGAGGGGTGTCAGTTTCTTTTAAACAGCCAGCTCTTGCTCGAACTATATTAATAGAGCGAGAACTCACTCATTACTGTGGGAAGGGCACCAAGCTATTCATGAGGAATCTGCCCCCATGACCCAAAAACCTCCCATCAAGCCTTACTTCCAGCACTGGGGGTCACATTTCAACATGAGATTTGGAGGGGACAAATATCCAAACTGTATCAGGAGGCAAGAGAATTGAGCTTTGGAGGGGTCCAGGAGTGGAAGGTCCAACATGGGGAAGCTCAGATTTAAGCAGAGGTGGGAGAAAGCTGGGAGGGGGTGGTCACATGGAGGCGTTTTGGAGTTTTAGCTCTTGAAGGTGTGTAATTCCTGTCACCAGTGCGACCTGACAGGTGGTCATATTTGTAGACTAGTGGAATCCAAAAGAATTTTAAAGCTGGATGGCCTAGGACACAATTAGATCACAATATATGTCACTTGATTTATTTGGTGTGTCAGGGGTATAGAAGAATGATAATATAGAATGAAGACACAGTGAATCCTAGGGTGTCAAAAACAGTAAGTTAGACTGGAGATCAACCGACTTAATATCCTTAATATTTACATAAGGAGACCAAAGTCCAGGGCATCTGACTTTGCTTAGGTCACCCACCACGTGGGCTGAAAACCAGGATCCCCTCCTGGGCCCCTTCCACTCTGGAGTGAGTGCTGCCAGCAGCGGAAGGCCTGGCTTGTACACACAGATGCAATGCTCCACAGTGCTCTTCCAAAACTTCATCCCATTCACCATAGGAATGGGCTATTTACACTGGAGTTGTGTTAAGTCCTATTACAGGTTGTGGCAACCTTCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTTGGCTCACTGCTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCCGGCTAATTTTTTTTGTATTTCTAATAGAGACGGGGTTTCACCGTGTTAGCCCGGATGGTCTCCATCTCCTGACCTTGTGATCCGCCTGCCTCAGCCTCCCAGAGTGCTGGGATTACAGGCATGAACCATCACGCCGGGCCAACAACCTTCTCTTTTCTTAGAGCAGATTCTCTCTTAAAAAATTAAATGTTCTGGTTGGGCGCAGTGGCTCACGCTTGTAATCCCAGCACATTTGGAGGCCGAGGCGGGTGGATCACCTGGAGTCAGGAGTTCGAGACGAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAAATAGCCAGGTGTCATGCACTTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGACCGAGCCATTGCACTCCACCCTGGGCAATAAGAGCAAAACTCAGTCTCAAAAACCAAAAACAAACAAACCAAAAAAAAGTTAAATGTTCTATTTTGACTCGAGGGTGGTTATTTCTATCATTGAAGAAAATTCAGCTTGAGCTTCCGAAGAGCATTCCCTGTTGCAATTCCTGACCTCGACTCTCTCTCTCTCTGCTTGTATAAACAACTCGAGAAATTTTACAATGGGGGCGTGCTGAAAAGCTAACAGGAAGCTTTCTGAGATTTTTGCATAGAAGTTTGGAGGCCCCAAATAAAAACAGACATAACTGCTCTGGTCCATTCTGTACATCTTTAAAAGAAGGAAGAAAAAATGAAAAAGTTTCTCTCCACCTCATTTTCCTCAACACACCCGCTTCAAGAGCAACCTTGTCTTGGTCTTCTGTGTTTCAG
Seq C2 exon
GGCTCAATCAAGACATCACAGATGTGTGTTTTTCCCCTGAGAAAGACCACAGCTCCAAGTCTGCGACCTCACAAGTCTATTGGACAGCCAAAACTCAGCACACATCCCTTCCTTTGTCCAAAGCCCCAGAAAATGAACACTTGCTTGGGGCAGCATCTAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931-FBXW10:NM_031456:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)