HsaINT0063001 @ hg38
Intron Retention
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:HGNC:1211]
Coordinates
chr17:18744075-18748105:+
Coord C1 exon
chr17:18744075-18744749
Coord A exon
chr17:18744750-18747940
Coord C2 exon
chr17:18747941-18748105
Length
3191 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CTTGGTCTTCTGTGTTTCAGGGC
3' ss Score
11.13
Exon sequences
Seq C1 exon
GAGAGAGATAGGCTTTCCATCCATGGCAGCCATTTACTTTTGCTCTGGGAGACGTTTGTAATAGAAAAGGCACAACTGGGGTATTTATTCATTCCCCCCGTTCCTCTAGTGTTTGGTGGCGTTGCCGTTGCAAGTGCGCAGGGCTAAAATGGACTGGTTATCTTAGGATCATGGAAAACCTGGAATCAAGGCTCAAGAATGCCCCCTATTTTCGTTGTGAGAAGGGAACCGATTCCATCCCTCTATGCCGGAAGTGTGAGACGTGTGTCTTAGCCTGGAAGATCTTCTCTACCAAAGAGTGGTTCTGCAGGATCAATGACATATCACAGAGGAGGTTTCTAGTTGGCATTCTGAAGCAGTTAAATAGCTTATATTTGTTACACTATTTCCAAAATATCCTTCAGACCACACAGGGAAAGGATTTCATCTATAACAGGTCCCGGATCAACCTCAGCAAGAAAGAGGGGAAAGTTGTGAAGTCCTCCTTGAACCAAATGTTGGATAAAACAGTAGAACAGAAGATGAAAGAGATCTTGTACTGGTTTGCGAACAGCACCCAGTGGACCAAGGCGAATTATACTCTCTTACTGCTGCAGATGTGCAACCCCAAATTACTGCTCACTGCTGCCAATGTGATCAGAGTCCTGTTTCTGAGAGAGGAGAACAATATCTCAG
Seq A exon
GTAAACAAGGCCACAGGCAGAGACTAGAGGGCCCCCGAAGACCAGAAGGCAAGGCTTCAGAAATCTGTAAGGAACTGCAGTTGTAGACAACATAGGTAGACAGAGATTGCACAGAACTCAGCATAGGTTTTTTGAACTGACACCTTGTCCTGACACCCGATCCTGTTTACCAAAGGAGAAATGACTGAGTGTAACTTCCTTCTTGAAAATGATCAATGCAGGAGGAAGTACACAACTTTTAACTCACAAGCATTTATCATGGATTTCTGCATCTCATAGGCCCAGAAATGGCTGGTCCCTGCCCCTGACCCCTTAATGCTGGTGTCGTTCCTGCTTTAGGGATTGGACTGAGCTCGAGAGGGTTGTAAAGGGGAAGCTTTTGTTTTTCTCTTCAGCTGCCCTGCACAGAAACCAGACCAAGAAGTCAAAACTTAGGGCTTTTTTTTTTTTTTTCATTCACTCTACCATGCTCCTTGCTTATCCATGAAATGAAACCTTAAAGTAGAGTTTCTCCAAGGCTGGAGATAGCTTAAGGGCCAAATAAGTCTAGGGTGGTAGTTCTCCAGCTGTGGCTTGTATCAGGATCTCCAGCAGGACCTGTTAAAACAAGCTCCTCCCCCAGAACTTCGGACTCAGCAGGTCTGAGGTGGGCCCAGGATTCTGTATGTCTTTTCTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGAAACCTCCACCTGCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCGTGCCACCATGTCCTAATTTTTTTGTATTTTTTAGTAGAGATGGGGTTTCACCATGCTGGCCAGGCTGGTCTCGGACTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACTCGACCAGGGATTCTGTATTTCTAACAAGTTTCCAGCTAGTGCTGATGTTGCTGGTCTGGGGATCTGTCTTTGAGAATCACAGGCCTAGGGTGTTGGAGAATCTTGGAAGTGTTTGGCCAGATAGTTCAGGGAAGCAGAAGAAACAATAAGGGTGGTGTCTGTTTTGCTTTGCTATAAAGGAATACCTGAGGCTAAGTAATTTATAAGGAAATTTCTAAGGAAAAGAGTTTTATTTGGCTCACAGTTCTGAAGACTGTACCAGAAGCATGGCACCAGCATCTCTTTCTGGTGAGGGCTTCAGGAAGCTTCCACTTATGGTGGAATGCAAGGGAAATCAATGTATCATGAGGCAAGAGAAGTAGCAAGAGAAGGGGAGGGGTGTCAGTTTCTTTTAAACAGCCAGCTCTTGCTCGAACTATATTAATAGAGCGAGAACTCACTCATTACTGTGGGAAGGGCACCAAGCTATTCATGAGGAATCTGCCCCCATGACCCAAAAACCTCCCATCAAGCCTTACTTCCAGCACTGGGGGTCACATTTCAACATGAGATTTGGAGGGGACAAATATCCAAACTGTATCAGGAGGCAAGAGAATTGAGCTTTGGAGGGGTCCAGGAGTGGAAGGTCCAACATGGGGAAGCTCAGATTTAAGCAGAGGTGGGAGAAAGCTGGGAGGGGGTGGTCACATGGAGGCGTTTTGGAGTTTTAGCTCTTGAAGGTGTGTAATTCCTGTCACCAGTGCGACCTGACAGGTGGTCATATTTGTAGACTAGTGGAATCCAAAAGAATTTTAAAGCTGGATGGCCTAGGACACAATTAGATCACAATATATGTCACTTGATTTATTTGGTGTGTCAGGGGTATAGAAGAATGATAATATAGAATGAAGACACAGTGAATCCTAGGGTGTCAAAAACAGTAAGTTAGACTGGAGATCAACCGACTTAATATCCTTAATATTTACATAAGGAGACCAAAGTCCAGGGCATCTGACTTTGCTTAGGTCACCCACCACGTGGGCTGAAAACCAGGATCCCCTCCTGGGCCCCTTCCACTCTGGAGTGAGTGCTGCCAGCAGCGGAAGGCCTGGCTTGTACACACAGATGCAATGCTCCACAGTGCTCTTCCAAAACTTCATCCCATTCACCATAGGAATGGGCTATTTACACTGGAGTTGTGTTAAGTCCTATTACAGGTTGTGGCAACCTTCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTTGGCTCACTGCTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCCGGCTAATTTTTTTTGTATTTCTAATAGAGACGGGGTTTCACCGTGTTAGCCCGGATGGTCTCCATCTCCTGACCTTGTGATCCGCCTGCCTCAGCCTCCCAGAGTGCTGGGATTACAGGCATGAACCATCACGCCGGGCCAACAACCTTCTCTTTTCTTAGAGCAGATTCTCTCTTAAAAAATTAAATGTTCTGGTTGGGCGCAGTGGCTCACGCTTGTAATCCCAGCACATTTGGAGGCCGAGGCGGGTGGATCACCTGGAGTCAGGAGTTCGAGACGAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAAATAGCCAGGTGTCATGCACTTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGACCGAGCCATTGCACTCCACCCTGGGCAATAAGAGCAAAACTCAGTCTCAAAAACCAAAAACAAACAAACCAAAAAAAAGTTAAATGTTCTATTTTGACTCGAGGGTGGTTATTTCTATCATTGAAGAAAATTCAGCTTGAGCTTCCGAAGAGCATTCCCTGTTGCAATTCCTGACCTCGACTCTCTCTCTCTCTGCTTGTATAAACAACTCGAGAAATTTTACAATGGGGGCGTGCTGAAAAGCTAACAGGAAGCTTTCTGAGATTTTTGCATAGAAGTTTGGAGGCCCCAAATAAAAACAGACATAACTGCTCTGGTCCATTCTGTACATCTTTAAAAGAAGGAAGAAAAAATGAAAAAGTTTCTCTCCACCTCATTTTCCTCAACACACCCGCTTCAAGAGCAACCTTGTCTTGGTCTTCTGTGTTTCAG
Seq C2 exon
GGCTCAATCAAGACATCACAGATGTGTGTTTTTCCCCTGAGAAAGACCACAGCTCCAAGTCTGCGACCTCACAAGTCTATTGGACAGCCAAAACTCAGCACACATCCCTTCCTTTGTCCAAAGCCCCAGAAAATGAACACTTGCTTGGGGCAGCATCTAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931:ENST00000301938:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains