HsaINT0063138 @ hg19
Intron Retention
Gene
ENSG00000090920 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:13572]
Coordinates
chr19:40397967-40399855:-
Coord C1 exon
chr19:40399239-40399855
Coord A exon
chr19:40398511-40399238
Coord C2 exon
chr19:40397967-40398510
Length
728 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CGCTCCCCCACTGCCCACAGGTG
3' ss Score
10.39
Exon sequences
Seq C1 exon
AGATCACCTGCCCAGAAAACAGCCACTATGAGGTCTGTGGCTCACCCTGCCCGGCCAGCTGTCCGTCCCCTGCACCCCTTACGACGCCAGCCGTATGTGAGGGCCCCTGTGTGGAGGGCTGCCAGTGCGACGCGGGTTTCGTGTTAAGTGCTGACCGCTGTGTTCCCCTCAACAACGGCTGCGGCTGCTGGGCCAATGGCACCTACCACGAGGCGGGCAGTGAGTTTTGGGCTGATGGCACCTGCTCCCAGTGGTGTCGCTGCGGGCCTGGGGGTGGCTCGCTGGTCTGCACACCTGCCAGCTGTGGGCTGGGTGAAGTGTGTGGCCTCCTGCCATCCGGCCAGCACGGCTGCCAGCCCGTCAGCACAGCTGAGTGCCAGGCGTGGGGTGACCCCCATTACGTCACTCTGGATGGGCACCGATTCAATTTCCAAGGCACCTGCGAGTACCTGCTGAGTGCACCCTGCCACGGACCACCCTTGGGGGCTGAGAACTTCACTGTCACTGTAGCCAATGAGCACCGGGGCAGCCAGGCTGTCAGCTACACCCGCAGTGTCACCCTGCAAATCTACAACCACAGCCTGACACTGAGTGCCCGCTGGCCCCGGAAGCTACAG
Seq A exon
GTGAGGAGGGCTGTGGGCCAGACAGGAGCAAGTGCCAGCTCTGGGGTTGCCTGAGATGGTAAGGGCTTCACCATTCCCCTGGGCACCTTTCACAGCTTAGCTGGGGCATGATGGAAGGGTCAGAGTGTACGCCTAGGAGCCTGACGGCTTGGCACAGCAGCTTCTTCCTCTGTGAGCCTAGTGTATTCCTCTGTAAACTGGTCTAGGAAAAGTACCTGTTTTCGAGAAGGATAAGGAGTCAGTGACATGAGCCAGTAGAGGCTCTTTGTTTTTCTTTTCTTTTTTTCTTTCTTGCTTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTAGCCTGACTCTGTTGCCCAGGCTGGAGTGCAGTGACAGGATTAGGGCTCACTGCAGCCTGGAACTCGTGGGCTGAATCGATCCTCCCGCCTTGGCCTCCACCTCCCAAGTATCTGTGACTAAAGGCACACGCCACCACGCTGGCTAATTTTTCATTTTTTTGTAGAGATGGGGGTCTCACTATGTTGCCCAGGCTGATCTGAACTTCTGGCGTCAAGCGATCCTCCCATCTCGGCCTTCCAAAGTCCTGGGATTGCAGGCTTTGCCACCAGGCCCGGCCTATAGATGCTCATTATTATTTTCAGCGGGAGGTGACATGCTCTGGGTCCCACAGCTAGTAGGTAGTGGGGCCAGGATTCAAACCCGTGTTTGCTCCGTTCACCGCTCCCCCACTGCCCACAG
Seq C2 exon
GTGGACGGCGTGTTCGTCACTCTGCCCTTCCAGCTGGACTCGCTCCTGCACGCACACCTGAGCGGCGCCGACGTGGTGGTGACCACAACCTCAGGGCTCTCGCTGGCTTTCGACGGGGACAGCTTCGTGCGCCTGCGCGTGCCGGCGGCGTACGCGGGCTCTCTCTGTGGCTTATGCGGGAACTACAACCAGGACCCCGCAGACGACCTGAAGGCGGTGGGCGGGAAGCCCGCCGGATGGCAGGTGGGCGGCGCCCAGGGCTGCGGGGAATGTGTGTCCAAGCCATGCCCGTCGCCGTGCACCCCAGAGCAGCAAGAGTCCTTCGGCGGCCCGGACGCCTGCGGCGTGATCTCCGCCACCGACGGCCCGCTGGCGCCCTGCCACGGCCTTGTGCCGCCCGCGCAGTACTTCCAGGGCTGCTTGCTGGACGCCTGCCAAGTTCAGGGCCATCCTGGAGGCCTCTGTCCTGCAGTGGCCACCTACGTGGCAGCCTGTCAGGCCGCTGGGGCCCAGCTCCGCGAGTGGAGGCGGCCGGACTTCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090920-FCGBP:NM_003890:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=28.2),PF127142=TILa=WD(100=28.2),PF0009420=VWD=PU(51.0=38.8)
A:
NA
C2:
PF0009420=VWD=PD(47.8=41.2),PF087426=C8=WD(100=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTCACCCTGCAAATCT
R:
ATGGCTTGGACACACATTCCC
Band lengths:
354-1082
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)