HsaINT0063139 @ hg19
Intron Retention
Gene
ENSG00000090920 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:13572]
Coordinates
chr19:40395804-40398510:-
Coord C1 exon
chr19:40397967-40398510
Coord A exon
chr19:40396397-40397966
Coord C2 exon
chr19:40395804-40396396
Length
1570 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
TGCCCACCTTGTCCCCACAGCCT
3' ss Score
10.59
Exon sequences
Seq C1 exon
GTGGACGGCGTGTTCGTCACTCTGCCCTTCCAGCTGGACTCGCTCCTGCACGCACACCTGAGCGGCGCCGACGTGGTGGTGACCACAACCTCAGGGCTCTCGCTGGCTTTCGACGGGGACAGCTTCGTGCGCCTGCGCGTGCCGGCGGCGTACGCGGGCTCTCTCTGTGGCTTATGCGGGAACTACAACCAGGACCCCGCAGACGACCTGAAGGCGGTGGGCGGGAAGCCCGCCGGATGGCAGGTGGGCGGCGCCCAGGGCTGCGGGGAATGTGTGTCCAAGCCATGCCCGTCGCCGTGCACCCCAGAGCAGCAAGAGTCCTTCGGCGGCCCGGACGCCTGCGGCGTGATCTCCGCCACCGACGGCCCGCTGGCGCCCTGCCACGGCCTTGTGCCGCCCGCGCAGTACTTCCAGGGCTGCTTGCTGGACGCCTGCCAAGTTCAGGGCCATCCTGGAGGCCTCTGTCCTGCAGTGGCCACCTACGTGGCAGCCTGTCAGGCCGCTGGGGCCCAGCTCCGCGAGTGGAGGCGGCCGGACTTCTGTC
Seq A exon
GTGAGTACTGCTCCATGCATGGTCCACATAGTAGGGTCTCTCCCTGCCCTTCCCAGGACTGTAGGACAGCAGCCCCTTCCTCCTCCATGAGGCTGAGGGGCCACCTTCCTTCCCGAGCTCGGTATCTACTGTCAGGAAACACCTTGGCACTGACACACTGAAATGCCCCAAGTCAGGTACTGCAGTGAGAGAGAGTCCGTTAGAAACACCTAGTCAGAGTGTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCAATTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGGTCGAGACTAGCCCGGCCAACATGGTGAAACCCCACCTCTACTAAAACTACAAAAATTATCCGGGCGTGGTGGCGGGCACCTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCCCTTCAGCCTGGGTGACAGAGATTCCATCTCCAAAACAAAAAACAAACAAACAACAAACAACAGAAAAAAAAAAAGAAAGAAAAGAAACCTGGGGTCCAGGACACTCTTAGGGATTGGTGATCCATGCTTTCAGGTATCCAAGGCATGTAGATTGGGATGGCTGACCCTGCCTCTGTCACATAGCAAAGTACCCCTTGTTAGGAAGACCTAGTGAGTTTCAGCTGGTCAGAGGGCCCAGGTCTGTTGCACACACTGAAATACACCTAGTCACATGGAATTAGTCGCATACCTTCAGTGATATCTGCTTAAATTTTATACTGACTGGTCAGATACACTCAGAAAGAAACAGGATCCTGGCATAGCCTTGGGCAGATCCACACAGATGCATGGTTAGATAGTCCTAGGCGGTTCCCTTCAGGCAGGTCTCCTGGTCACAGGTATCCTGCCAACTTCACCCAGGCACACCCTTAGGCAGACCATGTCAGAAGGACTCTGGGAGATGCTGCATGTCAGACACCCACAGCTGGGTGCCCTCAGGCAGAGCCATACCCTGAGATACATGTGGCCCCACACCCCAGTCACATTCACACGCTGAGATGCCCATAGTCAGTTCTGATCCTGCATACCCCGAATAGATATAAGTGATCCATTTCACCCAGGTAAGCCTGGCTTACATAGTGAGACCCCATCTCTACACAAAATAATAATAAATCAGCCAGATGTGGTGGCTTACTCCTGTAGTCCCAGCTAATCGGGAGGCTGAGGCCAGAGGATTGCTTGAGGTTTAGGTGGAGGCTGCAGCGAGCTGTGATTGCGCCTCTGCACTCCAGCCTGGGTGAGATAGAGTGAGAGCCTGTCTCAAAAAAAAAAAAAAAAAAAAATCAGCCAAGCAGAGTCATTTGATCTTCAGAAATATTTGGTCAGAGAGACCTGGGCATGTCCCCTCCCATTCCAGGTCCCACGCTGAGTCCCCCAGTTAGATGTCCTGGATCACATGTGCCTACCCAGAGACGCCCAAGTTGGCCTGAGCAGTTTTCCCACTCAGGGCCTCCCAAGACTGCGACTCAAACACCTACCTGGCTGATGCCCACCTTGTCCCCACAG
Seq C2 exon
CCTTCCAGTGCCCTGCCCACAGCCACTACGAGCTCTGCGGTGACTCCTGTCCTGGGAGCTGCCCGAGCCTGTCGGCACCCGAGGGCTGTGAGTCGGCCTGCCGTGAAGGCTGTGTCTGCGATGCTGGCTTCGTGCTCAGTGGTGACACGTGTGTACCTGTGGGCCAGTGTGGCTGCCTCCACGATGACCGCTACTACCCACTGGGCCAGACCTTCTACCCTGGCCCTGGGTGTGATTCCCTTTGCCGCTGCCGGGAGGGCGGTGAGGTGTCCTGTGAGCCCTCCAGCTGCGGCCCGCATGAGACCTGCCGGCCATCCGGTGGCAGCTTGGGCTGCGTGGCCGTGGGCTCTACCACCTGCCAGGCGTCGGGAGATCCCCACTACACCACCTTCGATGGCCGCCGCTTCGACTTCATGGGCACCTGCGTGTATGTGCTGGCTCAGACCTGCGGCACCCGGCCTGGCCTACATCGGTTTGCCGTCCTGCAGGAGAACGTGGCCTGGGGTAATGGGCGAGTCAGTGTGACCAGGGTGATCACGGTCCAGGTGGCAAACTTCACCCTGCGGCTGGAGCAGAGACAGTGGAAGGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090920-FCGBP:NM_003890:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(47.8=41.2),PF087426=C8=WD(100=41.2)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.3),PF0009420=VWD=PU(50.0=39.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACTTCCAGGGCTGCTTG
R:
CCAGTGGGTAGTAGCGGTCAT
Band lengths:
346-1916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)