BtaINT0061730 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005261 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr18:49736631-49739551:-
Coord C1 exon
chr18:49739008-49739551
Coord A exon
chr18:49737203-49739007
Coord C2 exon
chr18:49736631-49737202
Length
1805 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
TTCCCCTCTTGTCCCCGCAGCCT
3' ss Score
12.27
Exon sequences
Seq C1 exon
GTGGACGGCAAGCTGGTCGCCCTGCCCTTCCAGCTGGACTCCCGTGTGCACGCCTACTTGAGCGGTGCCGACGTGGTGGTGACCACCGCCTCCGGGATCTCGCTTGCTTTCGACGGAAACAGCAACGTGCGCCTGCGCGTGCCGGCGGCGTACGCGGGCGCCCTCTGTGGCCTGTGCGGGAACTACAACAAGAACCCCAACGACGACCTGAACGCGGTGGAAGGGAACCCCGACCGCTGGCAAGTGGGCGGCGCCGCGGGCTGCGGAGAGTGCGTGCCCGGGCCGTGCCCCAAACCCTGCACGCCCGAGCAACAGGAGCCCTTCGGCGGCCCCGACGCCTGCGGCGTGATCTCGTCCCTCGAAGGCCCGCTGGCTCCCTGCCACAGCCTCATTCCGCCCGAGCAGTACTTCCAGGCCTGCTTGCTGGACGCCTGCCAGGCTCAGGGCCATCCAGGAGGCCTCTGCCCGGCCGTGGCCGCCTATGTGGCAGCCTGCCAGGCCGCTGGGGCCCAGCTCGGCGAGTGGAGGCGGCCGGACTTCTGTC
Seq A exon
GTGAGTAGTGATCCATGCACGGTACACATAGTGGGGTCTCTCCTCCTACCCTCTTTGCTGGGCTCTGAGACAAGAGCCTTCTCCGTAGGGCTTAGGCACCATCCCGCCTTCCCTTAGCCTGTGAAAGAAATACCTTGGCATTCACACACTGGAATATACCCAGTGACATACTGCAATGGGAGAGACTCATACATGTGGCTAGAAATCCTGGGTCCAGTTGTTGTTCAGTCCCTAAATTGTGTCTTATTCTTTGTGACCCCATGGACTACAAAGCACCAGGGTTCCCTGTCCTTCACTATCTCTCAGAATTTGCTCAAATTCATGTCTGTTGAGTCGCTGATACCATCCAACCGTCTTGTCTTCTGTCGTCCCCTTCTCCTCCTGCCTTCAGTCTTTCCCAGCATCAGGGTCTTTTCCAGTGAGTTGGCTCTTCACCTCAGGTGGCCAAAGTTTTGGAGCTTCCGCTTCAGCATCAGTCCTTCAAATGGATATTCAGGGTTGATGTCTTTTAGGGTTGACTGGCTTGATCTCTTTGCTGTCCAAGGGACTCTCAAGAGTCTTCTCCTGCACCACAGTTCGAAAGCATCAATTCTTTGGTGCTCAGCCTTCTTTACGGTCCAACTCTCACATCCGTACATGACTACTGGAAAAACCATAGCTTTGACTAGATGGACGTTTGTCAGCAAAGAGATGTCCATATCCAGTCCAGTACACTGTCAGGATTTATGCACTCAGATAGACTGGGGTGACTGATCACCCCAGTAGATTCTCTCAGTTACCTCTGGTCAGAGAGACCTAGAGAGCTACACCTCGTCAGATGCCTCTGTTGGTGGTGGTGGTGTTTAGTTGCTCAGTTGTGTCTGACTCTTTGCAACCCCATGGATTATAGCTCTTCGGGCTCCTCTGTCCATGGAATTCTCCAGGCAATACTGGAGTGGTTTGGCATGTCCTTCTCCAAGGGATCTTCCCAACCCAGGGGTGGAACACAGGTCTCCTGCATTGGCAGGCAGATTCTTCACACTGAGCCACCAGGGAAGCTCCAGATGCCTCTAGACTGTTTTGTTTTGTTTTGTTTTTTAAACAGGGTAATGCACAGGGTCAGATAGATTTCGTCTCATAACCTCAGACAGGGCCTCCTCTGGTTAGAGACACTTGGTCACATTTACACAGAGACACACGTAGGCAGATATACCTATCTGGTGGAATCAGGGTGGAATCAGGACCCTGACATAGCCCCAGGAAGATACATACAGGTTCATGGTCCGAGAATCCTGGGCAGTTCCCCTTAGGCAGATCTCCTGGTCACGTTTATCCTGTCGGCTTCACCCAATGATACACGTGTGGTCAGAGTCACACACTGACAGACCCTGTCAGAGAGACTGTGAGAGGCTTCCAGATCAGACATCCACAGGCAGGCATACTCAGATGGATTCATACCCCAAGATGCATCTGGCCCCACACCCCAGCAAGATTCACACCCTGAGATACTCACGGTCGGTTCTAATCCTGCATATCTTGGTCAGATATATGAGGTTGGAGTCACCCAGTCAGACCGACTTGATCTTTAGAAATACTTGAGCAGGTTGTTACGCAGCCTGGCTAGAGAGACCTGCTTCCCAGATCCCCACACTGAATCCCCCATTGGCCGTGCTGGGTCAGACACCCCACTCAGATCCCTGGACAGATTCGCTCATGAGATATCCCAGGCAAAACACACAGAGTCACCCCAGCAGCTTCTCCCGCTCTGTACCTCCCCGGCGTCCTCCTCCCTCACGCCCTGCCTCCTTCCCCTCTTGTCCCCGCAG
Seq C2 exon
CCTTCCAGTGCCCTGCCCACAGCCACTACCAGCTCTGTGGTGACTCCTGCCCTGTGAGCTGCCCCAGCCTCTCAGCGCCTGAGGGCTGCGAGTCCACCTGCCGTGAGGGCTGCGTCTGCGACGCCGGCTTCGTGCTCAGCGGAGACACCTGCGTGCCTGTGGGCCAGTGCGGCTGCCTCCACGAGGGCCGCTACTACCCGCTGGGCGAGACCTTCTACCCGGGCCCTGAGTGTGGGCGGCACTGCCAGTGTGGACCCGGCGGCCAAGTCAGCTGCCAGGAGGGCGAGACCTGCAGGCCCTACGAGGAGTGCCGGGTGCAGGACGGCGTCCAGGCCTGTCGCCCCACCGGCTGTGGCCGCTGCCTGGCCAATGGGGGCGTCCACTACATTACCCTGGATGGACGCGTCTATGACCTGCATGGCTCCTGCTCCTATATCTTGGCCCAGGTCTGCCACCCACAGCCTGGGGACGAGGACTTTACAATTGTGCTTGAGAAGAATGCAGCTGGAGATCCCCAACGTGTGGTGGTTACTGTGGCCGGCCAGGTGGTGACCCTGGCTCGAGGGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005261:ENSBTAT00000006924:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(47.8=41.2),PF087426=C8=WD(100=41.2)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=28.3),PF127142=TILa=WD(100=29.8),PF0009420=VWD=PU(47.3=36.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACTTCCAGGCCTGCTTG
R:
CGGGTAGTAGCGGCCCTC
Band lengths:
342-2147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development