MmuINT0063661 @ mm10
Intron Retention
Gene
ENSMUSG00000047730 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:MGI Symbol;Acc:MGI:2444336]
Coordinates
chr7:28089596-28092057:+
Coord C1 exon
chr7:28089596-28090159
Coord A exon
chr7:28090160-28091464
Coord C2 exon
chr7:28091465-28092057
Length
1305 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
GGTGGCCCCTCTCTCTGCAGCAC
3' ss Score
10.17
Exon sequences
Seq C1 exon
ATGGCGTCCTTCAGTACCTGCCCTTCCAGGCTGCAGGTGGGAAGATTCAGGTGTACCGCCAGGGCAATGATGCTATCGTGAGCATAGACTTTGGCTTGACTGTTACCTACAATTGGGATGCTCACGTGACTGCCAAGGTGCCCAGCAGCTATGCTAAAGATGTGTGTGGGCTCTGTGGGAACTTCAATGGGAACCCAGATGACGACCTGGCTCTGAAGGGTGGAGGCCAAGCTTCCAATGTATTGGACTTTGGGAACAGCTGGCAAGAAGAGATAATACCTGGGTGTGGAGCAACTGAACCTGGTGACTGTCCCCAATTGGACTCCCTTGTGACCCAGCAAATTCAAGACAAAAAGGAGTGTGGAATCCTTGCTGATCCCGAGGGTCCATTCCGGGAGTGTCACAAGTTGCTGAACCCCCAGGGTGCCATACGTGACTGTGTCTATGACCTCTGCCTGCTGCCTGGTCAGTCTGGGCCACTGTGTGATGCATTGGCAGCCTATGCTGCTGCATGCCAGGCTGCCGGGGGCACTGTGCATCCCTGGAGGAGCGAGGAACTTTGCC
Seq A exon
GTAAGTACCAAGCATAGCATCCCTGGGGTTGAGTCTGATGTTTGTTCATTAACATACAAGTAGCATCATTTAATCCTTATGATGCCTAGTGAGGAATGGCCTGTGCTTGTGCCCTGGAAGAGCTGAGGAGACTGAAGGTAGCAACTTGCAGTTTCATGCCTGCTCTCAAGACAGCTAGGAAGTCAGAGGCAGCAGTGCGCAGCGACATTGTTGACTGAGAGATACTTGGTGGTGCTGCATTGGAAGGGAGCCCGGACCCCTCTGCAGCTGTCCTTGGTCCTATCTGGCCACTTTACCCAGCCACAGCTCTTTGCTGCAGATGTGGGTGCAGGAAGGGTTGGGAAGACATTTTGCTTGCCTTTCACAGAGATTTGGAAAGCCATCTGCCCATCTCCCGAGTTTTAAACTTCAGTCGAGTGTGCCCTCTGATGCATATTTTAACGGCATACAGGAACAAACGGCTTTACTAGCTTTTTCAGCGGGAACACAAATGTAAATAATAGTGCTAGGCTCCCTGTCCTGGAGGGAGCTGCCATTTCGCTCTTGAGGGCTTGAACTCTGTGAGTGGAATGTGCACCTCCAGCTGCTCCATCTTGAGTATAGATAATTGCAAACGCTGAAACTCCCAGCAAGTGGCATCTTGGACTTCTAAGAATCTCTTTGCTTGTGGGAAAAACACAGGACAGTGGACCTTTTATGTCCATCATCCAGGTTCTACAAAGATTAACATGGTACTATTTCAAACTGCTATTACAGTGAGAGAGAGAGAGAGAGAGAGACGAGAGAGAGAGAGTGTCTGTGTCTGTGTGTGTCTGTGTCTATGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTCTGTGTCTCTGTGTGTGTATGAATGCTACTGCTGGGGAATGGTGGAATGCTTTTCTTGACTATCAGAGGTTCTGAGTAAAAAGAAAACCCAGAAGCAGGAGAAGGGTATGCAGGAGGGCAGAAGGTGGAGAGGAAAGACAACATCTGCAGGCACACTGCATAGATTACTCACATGTACATGTGCATGCGTGTTTAAAACATGCATTGCATGCAGTTTATGCCCAACTTGAATACACAGAGATAATCACAAATTTGAGTGGTGTGAGAATCAAATATTCATTGACAAATCCAATTAAATGTGTTGGGAGATGATCTCCTGGTGCCACCGAGCACACAGACCTCTTGTCGATGACTCAGCATGTATGTGTGTATGAGAGACTGAAGTGTACAGGGGATCCACTGTGACCCTTTGAAAGAGCTAATGATCTTGGTGGCCCCTCTCTCTGCAG
Seq C2 exon
CACTGACCTGCCCACCTAACAGCCACTATGAGCAATGTTCCTACGGATGCCCACTGTCCTGTGGAGACCTGCCAGTGCAGGGAGGCTGTGGCTCAGAATGCCGAGAGGGCTGTGTTTGTAATGAGGGCTTTGCCCTCAGTGGTGAGTCTTGTGTGCCTTTGGCCTCCTGCGGCTGTGTACACGAGGGCGCCTATCACGCACCAGGAGAAACCTTCTATCCTGGACCTGGATGCGATTCTCTTTGCCACTGTGAGGAAGGTGGCCTGGTTTCCTGCGAGCCCTCATCTTGCGGCCCACAGGAGGCCTGCCAACCATCCAATGGAGTCCTGGGGTGTGTGGCTGTGGGCACTACTACCTGCCAGGCATCAGGAGACCCTCATTACGTCACCTTTGACGGCCGCCGCTTTGACTTCATGGGCACCTGTGTGTATGTGCTAGCGCAAACCTGTGGAAACCGGCCTGGTCTACACCAGTTCACTGTCCTGCAGGAGAATGAGGCCTGGGGTAATGGGAAAGTCAGTGTGACCAAGGTGATCACCGTCCTGGTGGCCAACTACACCCTGCGCCTGGAGCAGAGTCAGTGGAAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047730:ENSMUST00000138392:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(47.4=39.2),PF087426=C8=WD(100=40.2)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.3),PF0009420=VWD=PU(50.0=39.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGAACAGCTGGCAAGAAG
R:
ATAGTGGCTGTTAGGTGGGCA
Band lengths:
344-1649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types