BtaINT0061718 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005261 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr18:49749971-49751466:-
Coord C1 exon
chr18:49751325-49751466
Coord A exon
chr18:49750564-49751324
Coord C2 exon
chr18:49749971-49750563
Length
761 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
GACGGCCCCTTTCCCTGCAGCGC
3' ss Score
10.93
Exon sequences
Seq C1 exon
GGTGCTGTGCGCGACTGTGTCTATGACCGCTGCCTCCTGCCAGGCCAGTCCGGGCCTCTGTGTGATGCACTGGCAGCCTACGCTGATGCGTGCCAGGCTGCTGGGCTCACCGTGCACCCCTGGAGGAGTGAGGAACTTTGCC
Seq A exon
GTGAGTACCGAGAGTGACAGCTGGGGGGCTTGGCCTTATGTACATTCATTAATATATAGATAGCATTAAGTCACTTAATTCTTATAACAGCTCCATGAGGTAGGGGTGTGGTTATACCCATTTAACAGATGAGGAAACAGGTTTCTACTTCATTGTCACTAACTTACATTTAAATGGGCCATGGGTGGCTCTCGGATTGGACGGACGGTGCAGAGAGAGACTTGATTGGGTTCAGTTTCAGGGTTTTCTGTTTTTGTGGAAACCCCTGTTTTATAATCTGAGGTGGTGAGTTTGGAGTGAGGAATGGGGATTCTTTTTCACTGTTTTCTGTACCACCCTGGACAAATATTTTAATTTTCTATAGAATTACTACCACCAGTACTACATTACTGCTATAGAACAAAGAAGCTAAAAATACTGCATTTACAAATACATTGCATAGATTATAGAGACACATGCCTATGCATGTTTAAAATATATATCACAGATCCACAACTTGTTACCAACTTGAATAAGGTCATTAAAGACAGTACAGATGACCCCAGACCACAGTTAAATTGGAATAGAATCTTAATTATCAGGATTAGATTAACTGGGATGTAATGTTTCCTGGGCCCCACCGAACTGAGGGGTTCCTTGCCGCCGGACTGCTTATACGTGTGAGTGTGTGTGTGCATATGTGCATGCACGTGTGGGTCAGGGGGTCTTCGGTGTCACCGGGGAGCAAGGCTGCTTCGTCCTGACGGCCCCTTTCCCTGCAG
Seq C2 exon
CGCTGAGCTGCCCATCCCACAGTCACTACGAGGAGTGTTCCTATGGCTGCCCGCTGTCCTGCGGAGACCTCCCGGTGTCCGGGGGCTGCGGCTTCGAATGCAAAGAGGGCTGCGTGTGTGACGAGGGCTTCGTGCTCAACGGTGAGTCCTGCGTGCCGCTGGCCTCCTGCGGCTGCGTGTACCAGGGCTCCTACTACCCGCCCGAACAGACCTTCTACCCGGGACCCGAGTGCGATTCCCTTTGCTACTGCGAGGAGGGCGGGCTGGTGTCCTGTGTGCCGTCCAGCTGTGGCCCTCACGAGGCCTGCCAGCCGTCCAATGGCGTCCTGGGCTGCGTGGCTGTGGGCTCTACCACCTGCCAGGCATCCGGAGACCCCCATTACACCACCTTCGACGGCCAACGCTTCGACTTCATGGGTACCTGCGTGTACGTCCTGGCTCAGACCTGTGGGACTCGGCCTGGCCTGCCCCAGTTTGCTGTCCTGCAGGAGAATGTGGCCTGGGGCAACGGGAAAGTCAGTGTGACCAAGGCGATCACCGTGCAGGTGGCCAACTTCACCCTGCGGCTGGAGCAGAATCAGTGGAAAGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005261:ENSBTAT00000006924:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=97.9)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.3),PF0009420=VWD=PU(50.0=39.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTGTCTATGACCGCTGC
R:
TCCCGGGTAGAAGGTCTGTTC
Band lengths:
354-1115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development