DreINT0010755 @ danRer10
Intron Retention
Gene
ENSDARG00000098278 | FCGBP (2 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr15:36554346-36556661:-
Coord C1 exon
chr15:36556097-36556661
Coord A exon
chr15:36554765-36556096
Coord C2 exon
chr15:36554346-36554764
Length
1332 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
TTATCTGAATGTGCTTTCAGCTT
3' ss Score
7.01
Exon sequences
Seq C1 exon
ATTGACCAGATTTTGTGGAGCCTTCCTGTCATTCTTGATGATGTTGGAGTGAACATTTTTCAGTCTGGGAGTTTCGTCAGCATCCTTTTTTCTTTCGGACTGAATGTACAGTATGACTGGAGCCACTATCTCACAGTTTCCCTGCCTGCTGCCTTCATGAATAAAGTCTGTGGACTCTGCGGCAACTTCAATGGTGATCCTACTGATGATTTTACAATGCCTTCCAGCACCCAAGCTCCCAATTCGACAGTGTTTGGCCAAAGTTGGAAAGTCCAGAACTTAACACTTGATAAAGGCTGTAGAGATGATAATGGTGGCCATGAATGTGATGCTCAAGCACTTCAACAATGGCAGACTGAAAACTACTGTGGACTTTTAATGAAGGATCCATTCAGCCAGTGTCACTCTGTTATAGACCCTAATATTTACATCCGCAACTGTGTGTATGATGTTTGCATGGCAGACGGGAGCGGAAGCTACTTGTGTAAGGCGTTAGAGGTGTATGCAAGTGTATGTCAACGTGTTGGGATACAGCTAACCAAATGGAGAGAAGCAGCCAATTGTA
Seq A exon
GTAAGTATAAGAAGTAAGACTTTACTTAAAGGGGTGTTCATAAGGCTTCCATTAAACCTTTATAATCATGACAATGACACATGAGTTTTTATGCATGCTTATAACAACTGCCAATAAGTGTCATTTGCACTGTTACGACGTTTTAATCCAAACATGGCATTGTTTGTTATGACCACTCGACATTACCAAGAAAGCAATAATTGTCATAAATCTGTCATAAACATGATTGTCATGAAGCCATTATAAATATAGCATGAATTTTATAACACCATTATTTTTTTTACCTCAATTACAGTAGTACAAGCTAAATTTCTTAATAAAATGTCATTAAATAGTATTAACGCTGTTTTAAAAACTATTTTTAACACTTTTAATGAGACATTTTAAAGACAAATACAGTTTGTTTCACATAAAACATGATCAGAACCAATTATAATGCTTCATGGCCATCGTGTTTATGACAGAATTTTGACAAGTTATGTTTTCTTGGGAATGACAAGTTGTCATGGCAGAGATAAAGACTTGTTGCGATGTATTTGTCAACATAGGCTCATTCTGAGAATGCAGCCTTATATACGTTTCTGGAGATCGCAAAATATGTAGCCAGAGGTACGAATGGCTGCATTTCGTTTTTAAAACGAATGCTACGGGGCAGTATGACCCCCTTCCTTGTTGCGCTGTCCAGCTGATCGCCAACCTCCATATGGACAGCTTTCCCGCTGTTACCAGTTTGTCTGGTAGCTCGACATGTATGTCGGTGGACTTGAGACGCAGAGCGGAGTTAACTGCGACAATGAGGTTTGAATCCGGAGAAAAACGCTTCCAGAAAGCAGGTAAAACAAAACAAAAATAAAATAAACAAGTAAATAACAAGGTGAGAATGTGGTAAAATCTGAAAATGTAGTAAAAATCAGACGAGGGCTTTTCTTTTTCTGGAATGCTTTTTAAAACACTGCGGTTGGGGTTAGGTAAGGTGGTGGGCGGGTCAATCAGTGCTTTTTAAAACACTATTGGTTGAGTTTAGGAGAGAGTGGGGGATAGGTTGGTTGGTCATTCAGTAAATCAGTCAGTTGACAGCAGCCTCTGGTGGATTTACGAGACAGCAGCAGGCGCGAATGACACTCTAAAGAGAAATTTGAGATCTGAAAAAGCACACAGTGACCTATGGTGGATTCGCAAAAACAAAAACTGCAAGTATACGTAGCTCCTATTTTGCTCCCTCCAGAAATGTATATAGCGGTATGTAATCAGAATGAGCCTGGGTTGAAGAAATAAGCAAAACACATAGTAAACAATAATGTTGTTATTAATATTATCTGAATGTGCTTTCAG
Seq C2 exon
CTTACAGATGCCCTGAAAACAGCCATTATGAATCTTGTGGTAGTGCTTGCCCATTGACCTGCATGGACCTCAAGTCTCATAAGAACTGCACTTTACCTTGTATTGAAACGTGCACTTGTGATCCTGGGTTTGTTCTGAGTGGATCCAAATGTGTCGCATCGACTCAATGTGGCTGTTCCTACAATGGACGATACGTTCCTGCTGGGGAGGCTTTCTGGGCGGATAATGCTTGCCAGCGGCTTTGTCATTGCTCCGTAGAGGGTGGACTTCTTAAATGCCAGGATGCCAGTTGTGGAGCAGGACTGCGCTGTGAGGTGGTCAATGGCGTTACGGGGTGTTATCCATTCCTCCAAAGCACCTGCATGGCATTGGGAGACCCACACTACTACACCTTTGATGGGAAGTTCTTCGATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098278:ENSDART00000164162:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=40.2),PF087426=C8=WD(100=39.2)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=38.6),PF127142=TILa=WD(100=40.7),PF0009420=VWD=PU(12.2=13.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAATGGAGAGAAGCAGCC
R:
TAACGCCATTGACCACCTCAC
Band lengths:
358-1690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]