RnoINT0060182 @ rn6
Intron Retention
Gene
ENSRNOG00000019129 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:RGD Symbol;Acc:2313189]
Coordinates
chr1:85016669-85018471:+
Coord C1 exon
chr1:85016669-85017239
Coord A exon
chr1:85017240-85017866
Coord C2 exon
chr1:85017867-85018471
Length
627 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
CAACTTCTATCCTTCCACAGCCA
3' ss Score
8.96
Exon sequences
Seq C1 exon
ATTGACAATCAGCGCTCCCGCCTCCCTGCCTCTCTGAGTGAGGGTCGCCTGCGTGTGTACCAGAGTGGAACACGGGGTATTATAGAGCTGGACTTTGGGCTGGTGATCAGCTATGACTGGGACTCCCAGCTGACCCTGAGCCTGCCCAAGCGCTTCCAAGACCAGGTGTGCGGGCTGTGTGGCAACTATAACGGAGACCCTGCTGATGACTTCCTCACGCCGGACTTGGAGCAGGCCCCCAATGCCTTGGAGTTTGCAAATAGCTGGAAGCTGGATGATGGGGACTACCTGTGTGATGATGGTTGCCACAACTCTTGTCCCTCCTGCACCCCGGGCCAGATGCAGCACTACAAGGGGGACCGTCTCTGTGGCATGCTAGCTCTGTCCACAGGCCCCTTCTCTGCCTGTCATGAACTCCTGGACCCCAAGCCTTTCCTGGAAGATTGTGTGTTTGACCTGTGTGTAACTGGAGGGGAGCGGCTCAGCCTGTGCCGGAGCCTTAGCGCCTACGCCCAGGCCTGTGTAGAACTGGGTGTCACTCTTGAGAACTGGAGACAGCCATCCAACTGCC
Seq A exon
GTAAGTATAGCAGCAAGGACGGAAGCCCACGATGAGGGGCCCATTGTCTGAATGATGACTGGGATCCAGCCTGATGTTAGGCAATGACGGAGACCCAGGTTGGCATCCAAGCTTTTCTAAAGGTAGCCCAAGATTGAGACAGACGTGGCCCTGGAAAGGGAGAGTACGGAGTCGCTGGAGGTTAAGATAGAGAAACCGTGCACAGACAGGTAGGGGTGTGAGTGAGAGGCGGGGACAGGGAGATGATGAGAGGGAACCCCTGAGACTTGGGAGATCTCTGCTTTCCCCTGAGTGAGACAGAGCCACAGGAGGGAGCTGGGGGGGGGGGTGAGGTACTTGGCCAGAGCTTGCATTTGCAGTCTGTCAGGTACTGTGAGGAGCACATTTGGTATAGAGGAGCAAGGAACCAATCAGGAGGCTGCTGTGGTTCCTGGGCTATGGAGACAGATTCTGCATGGGGCTGGAAGGTGGAAGTCCCAGGATTTGCCCACTGACTGCTTGACTGTCCAGGGTTGTCCAGGGTGGAGGGGGGGCATTGGGGCTTGAGCATCGAGAAGGTACAAGTGCCATTAACCGAGGGATGTGGACCTCCCACCCTGGGTTGACACAACTTCTATCCTTCCACAG
Seq C2 exon
CCATGTCCTGTCCTGCCAACAGCTGCTATGATCCTTGCAGCCCCGCCTGCCCGGCCTCCTGCAACTCAGAAGCCCTGCCGTCCAACTGCTCTTCACGCCCTTGCGTGGAGGGCTGCGTGTGCCTTCCAGGCTTCGTGGCCAGTGGTGGTGATTGTGTGCCTGTCTCATCCTGTGGGTGCACCTACCAGGGACGCCCATTGGCCCCGGGTCAGGAAGTGTTCGCTGACGACCAATGCCAGCGCCGCTGCACCTGTGATGGCGCCACTCAGAAGGTGACCTGCAGGGACACATCAGGATGCCCTAGTGGCGAGCACTGCAACGTGCAGAATGGCCTCCTGGGTTGCTACCCAGACAACTTCGCCAGCTGCCAGGCATCTGGAGACCCGCACTACGTGAGCTTCGATGGAAAGCGCTTTGACTTTATGGGCACCTGCACGTACCTGCTGGTGGGCTCGTGCGGCCAGAACGCCGCGCTGCCTGCCTTTAAGGTGCTGGTGGAAAACGAACACCGAGGCAGTCAGACCGTGAGCTACACAAGAGCCGTGCGGGTGGTGGCCCATGGTGTAGAGGTGGCTGTGCGAAGGGAGAATCCTGGGAGAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019129:ENSRNOT00000057122:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.2),PF127142=TILa=WD(100=28.7),PF0009420=VWD=PU(50.6=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGTCATGAACTCCTGGA
R:
CACAGGATGAGACAGGCACAC
Band lengths:
344-971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]