MmuINT0063659 @ mm10
Intron Retention
Gene
ENSMUSG00000047730 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:MGI Symbol;Acc:MGI:2444336]
Coordinates
chr7:28084922-28086724:+
Coord C1 exon
chr7:28084922-28085492
Coord A exon
chr7:28085493-28086115
Coord C2 exon
chr7:28086116-28086724
Length
623 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
CAACTTCTGTCCTTCCTCAGCCA
3' ss Score
7.32
Exon sequences
Seq C1 exon
ATCGACAATCAGCGCTCCCGCCTCCCTGCCTCTCTGAGTGAGGGTCGCCTACGTGTGCACAAAAGTGGAACACGAGGTGTGATAGAGATGGACTTTGGGCTGGTGGTCACCTATGACTGGGATGGCCAACTGACCCTGAGCCTGCCCAAGCGCTTCCAAGACCAAGTGTGCGGGCTGTGCGGCAACTATAATGGAGACCCTGCCGATGACTTCCTCACGCCTGACTTGGACCAGGCTCCCGATGCCTTGGAATTTGCAAATAGCTGGAAGCTGGATGATGGGGACTACCTGTGTGATGATGGCTGCCACAACTCTTGTCCCTCCTGCACCCCAGGGCAGACCCAACACTACAAGGGAGACCGTCTCTGTGGCATGCTAACTCTGTCCACAGGCCCCTTCTCTGCCTGCCATGAATTCCTGGACCCCAAGCCTTTCCTAGATGATTGTGTGTTTGACCTGTGTGTCACTGGAGGGGAGCGACTCAGCCTGTGCCGGAGCCTTAGCGCCTATGCCCAGGCCTGTGTAGAACTGGGTGTCACCCTTGAGAACTGGAGATTACCAGCCAGCTGCC
Seq A exon
GTAAGTAGCACCTAGGATGAGAGCCCACGATGAGGGGCATTTGCCCAATATCTGAATCATGTCTGTGATTTAGCCTGATGTTGGACAGTGACAGAGACACAGGTGGGCCAAGACATCCAAGCTTTGCCAAAGTTAGAGACAGACATAGCACTGGAAAGTGAGAGTTCAGAGTGACTGGAGGTTATGATAGGGAAGGCATAGACAAATGGGTAGGGGTTGAGAGAGATGAGAACAAGGAGATGATGAGGAGAACCCCTGGGCCTTGGGAGGACTCTGTTACCCCCTATCACCCCCCCCAGTGAGACGGAGCCACAGGAGGTGGGGGGTGAGGTACCTGGTCTGAGCCTGCGTTTGCAGTCTGTCGGGTACTGTGAGGAGCACATTTGGTGCAGTGGAGCAAAGAGCCAAGCAGGAGGCTGCTGTAGTTCCTGGGCTGTGGAGACAGATTCTGCAAGGGCTTGGAAGGTGAAAGTCTCAGGATTTGCCCACTGCCTGGTTGGTTGTCCAGGGTTGTCCCGGGTGGAGGGGGCATTGGGACCTAAGCATCAAGAAGGTAGGAGTGCCATTAACTGAGAGGTGTGGGCCTCCCACCCTGGCCTGACACAACTTCTGTCCTTCCTCAG
Seq C2 exon
CCATGTCCTGTCCAGCCAACAGCTGCTATGATCCTTGCAGCCCTGCCTGCCCGCCTTCCTGCAACTCAGAAGCTGTGCCGACCAACTGCTCTTCTCGCCCTTGCGTGGAGGGCTGCGTGTGCCTTCCAGGCTTCGTGGCCAGTGGTGGTGATTGTGTGCCTGTCTCATCCTGTGGGTGCATCTACCAGGGTCGCCTGCTGGCCCCGGGTCAGGAAGTGTTTGATGATGACCGATGCCGCCGCCGCTGCACCTGTGATGGAGCCACTCAGAAGGTGACCTGCAGGGACACAACAGGATGCCCTAGTGGTGAGCGCTGCAATGTGCAGAATGGCCTCCTGGGTTGCTACCCAGACAATTTCGCCAGCTGCCAGGCATCTGGAGACCCGCACTATGTGAGCTTCGATGGAAAGCGCTTTGACTTTATGGGTACCTGCACATACCTGCTGGTGGGCTCATGCGGCCAGAACGCTGCGCTGCCTGCCTTTAAGGTGCTGGTGGAAAATGAACACCGAGGCAGTCAGACCGTGAGCTACACAAGAGCTGTGCGTGTGGTGGCCCATGGGGTAGAAGTGGCTGTGCGAAGGGAGAATCCTGGAAGAGTGCTGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047730:ENSMUST00000138392:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.1=39.3),PF087426=C8=WD(100=39.8)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.2),PF127142=TILa=WD(100=28.7),PF0009420=VWD=PU(50.6=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCATGAATTCCTGGACC
R:
CACAGGATGAGACAGGCACAC
Band lengths:
342-965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types