HsaINT1013478 @ hg38
Intron Retention
Gene
ENSG00000275395 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr19:39915185-39918642:-
Coord C1 exon
chr19:39918072-39918642
Coord A exon
chr19:39915790-39918071
Coord C2 exon
chr19:39915185-39915789
Length
2282 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CCTCTCTGATCTCCCCGCAGCCC
3' ss Score
11.63
Exon sequences
Seq C1 exon
GTTGACAACCAGCGCTCGCGCCTGCCAGTCTCCCTGAGTGAGGGTCGCCTGCGTGTGTACCAGAGCGGACCACGGGCCGTGGTGGAGCTGGTCTTTGGGCTGGTGGTCACTTATGACTGGGACTGCCAGCTGGCACTCAGCCTGCCTGCACGCTTCCAAGACCAGGTGTGCGGGCTGTGTGGCAACTATAATGGTGACCCAGCAGACGACTTCCTCACGCCTGACGGGGCTCTGGCTCCTGACGCTGTGGAGTTCGCAAGTAGCTGGAAGCTGGATGATGGGGACTACCTGTGTGAGGATGGCTGCCAGAACAACTGTCCCGCCTGCACCCCAGGCCAGGCCCAACACTATGAGGGCGACCGACTCTGTGGCATGCTGACCAAGCTCGATGGCCCCTTCGCTGTCTGCCATGACACCCTGGACCCCAGGCCCTTCCTGGAGCAGTGTGTATATGACCTGTGTGTGGTCGGTGGGGAGCGGCTCAGCCTGTGCCGTGGCCTCAGCGCCTATGCCCAGGCCTGTCTGGAGCTTGGCATCTCGGTTGGGGACTGGAGATCACCAGCCAACTGCC
Seq A exon
GTGAGTGATGCCCTGGGTGGGGGCTGGGAGCATACAGTGAGGGGCAGGAGATCCCTAGCATCTGCTTAATATCTGAGAAGTTATTATGGTTCAGCCTGGTGCTGGGCAATGCCAGGGGCCTAGTGATGGCCAAGACAGCCAGCTCTGTCCACAATGAGCCTAAGGTTGGAGAGACGTTTCACTAGACATTGACAGTCTGGAGGGGTCCAGGCAGGATGGGGAGGCCCACTCGGATGGGTTGGGGCCAGGATGGGAGAGAGACAGGCAGATGAGTCAGGGCTGGGATTGCGGGGGACACAGGCAGAGGGGTTGGGGCCAGGATGGAGGAAGTCAGTGGGGCTATGGGAAACCAGAGGAGGTTCCTGGCCCAGCCTGGGGAGCAGGGGTGGTCAGGGAGGGTTTTCTAGAGAAAGATGTCCAATTTGAAACCCATAAGAGGGGCTGGAAGTTGCCAAGAGAAAGAGGAGGAAGTGAGTTGCAGGCCCAGAGAACAGCATGCTCAAAGGCTTGGCAGGACGGGAATTCTTGTCTGCAGAATCCCAACACAGAGACGTGACGTCTCTTCCTTTGCCTATAGCCCTCCCATGACTCCCATTGCCCTCTAGATAAAGTCCAGGCTCTTTAGCCAGGTGTCCGTCTGCTTAATCGTTCACTCATTCATTCCACAAGCATTCCTTGAACCCCTGCCTGCCCCCTGTGCATGCTAATGATATTGAAGACACAGTGAAGACCAGCATAAATCTATTCCTGCCCTTGTGAGTGAGGCTCCTAGAGACATGTCCCAGAGGCAGAAAGGACAGGTAGGAGGGAGGAAGAGGCATCCAGGCCCAGGCCCAGAGGGAGGGGGAGTAAGTACAGGGCAGACATAGAGGCCACTAGGTGTTTGTCTTGGCCAGTTCTGTGTCCCCACTGCCCAGTAAGCACCCCCCCAACCCCATGCCTGGCGCAAAATAGGAATCAGAGAGTTCATTTATTCTCCCTTTCACTTCTGCAGTATTTCCTGAGCACCTGCTGCGTACCAGGCCCTGTCCTTGGTGCTGGGGACTCAGCAGTGATTGAGACAGATCAGGTCCCCACTCCCGCAGAACTTCTCTCTTAGCGGCAGGGGAGGGACACAGACAGTGAGCAGATGAACTAGGAAGTATCTTCAGAGAGGCAAAGAAACAAGTTCATTCAATGACAGTGACTGTGAGGCTCGTGAAGAGGGTGATCAGGGAAGGCCTTTCTGGGCAGGTAACATTGGAGCTGAGACCAGGGTCAGGCAATGGAGTCAGCTAAGTACTAACTAACAGTGATGTCCACAGAATGTTTCCCCATAGATCAACTCATTTAATCCTCACAACAACCCTGTGAGGTCTCGACTACATTATCCCATCTTACTGATGGGGAAACTGAGGCACGGGGAGATTGGAGTCAGTGGCCGAGAAGGAGAGATCTGGGATCTGAACCCAGGCCACCTGGGCCCCAGTGGGCTTTCTGGGGAAAGGGAAGGCAGAGGGAACAGCCAATGCAAAGGCCCTGAGGTGGGAGGGTGAGGACCCGGGAGGAGGAGGCAGCTGGGGCTGGGGCAGAGTGAGCCCGAGGGAGAGGGAGAAGAGGTGAGGGCTGAGAGGTGAGAGGAACAGATGGCACAGGGCCTCCTGAGGCATGGGGAGGACTCTGGCGTTTACCCTGAGTGAGAGGAAGCCACAGTAGTGCTCTGAGATGGGGAGGGACCTGATCTGACCCAGATGTTCCCAGATTCCTCGGCCTGGTGTGAGGAACAGGCTGTGGGGGCAGGAGGGAGCCCAGGCAGGAGGCTGCTGCGGTGGATAGGATCAGAGGCAGATTCTGTAACTGGGTGGATTTTTTTTTTTTTTTTTGAGACAAAGTCTTGCTCTGCGCCCGGGCTGGAGTGCAGTAGTGTGGTCTCAGCTCACTGCAACCTCCGCCTTCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTTGAGTAGCTCGGATTACAGGCCTGCGCCACCACTCCCGGCCAATCTGGGTAGATTTTGAATATGGAGCTCACAGGACTTGCTGACAGATTGGTTGTCCAGTGAGCGTTAGGGGGTTGGCGGGGTGGAGATTAACTGCGTCGCTGGGGTGTGGCGCAGGAGCACCCAGAAGAATGGCAGTGCCATTATCTGAGATGGCGAGCTCTGAGAGAGGAGCAGGGTTTGGGGATGGAATTCCTGGGCGCCGTCCCCGACAGGGCGCTCTTCGACGGCCCCTGCTACGCGGGCCTGATCCACCCTCTCTGATCTCCCCGCAG
Seq C2 exon
CCCTGTCCTGCCCTGCCAACAGCCGCTATGAGCTCTGCGGCCCTGCTTGCCCGACCTCCTGCAACGGGGCTGCGGCGCCGTCCAACTGCTCCGGGCGCCCCTGCGTGGAGGGCTGCGTGTGCCTCCCAGGCTTCGTGGCCAGCGGCGGCGCCTGCGTGCCGGCCTCGTCGTGTGGCTGCACCTTCCAGGGTCTCCAGCTCGCTCCGGGCCAGGAAGTGTGGGCGGACGAGTTGTGCCAAAGGCGCTGCACCTGCAACGGCGCCACCCATCAGGTCACCTGCCGCGACAAGCAGAGCTGCCCGGCGGGTGAGCGCTGCAGCGTCCAGAACGGCCTCCTGGGCTGCTACCCCGATCGCTTCGGGACCTGCCAGGGGTCCGGGGACCCACACTATGTGAGCTTCGACGGCCGGCGCTTCGACTTCATGGGCACCTGCACGTACCTGCTGGTCGGCTCATGCGGCCAGAACGCAGCGCTGCCTGCCTTCCGGGTGCTGGTGGAAAACGAGCATCGGGGCAGCCAGACTGTGAGCTACACGCGCGCCGTGCGGGTGGAGGCCCGCGGGGTGAAGGTGGCCGTGCGCCGGGAGTACCCCGGGCAAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000275395:ENST00000616721:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.2),PF127142=TILa=WD(100=28.7),PF0009420=VWD=PU(50.3=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains