GgaINT0032051 @ galGal3
Intron Retention
Description
NA
Coordinates
chr9:14289504-14290474:-
Coord C1 exon
chr9:14290197-14290474
Coord A exon
chr9:14289950-14290196
Coord C2 exon
chr9:14289504-14289949
Length
247 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TTTTCCTTTTGTCTTGGCAGCCA
3' ss Score
9.46
Exon sequences
Seq C1 exon
CTGCTCAGCTGGGATGCAGTCCCCGCCAGCCTGCACTGAAACGGACAAGCAAGTCATTGCCAGCAGCAACTTCTGTGGGCTCCTCACGGACACCAGCGGCCCGTTTGAGGTGTGCCATGCCGTGCTGAGTGCCAGCGGTTACTTCGACACGTGCCTGTATGACCTGTGTGAGCTGGGGCTTGATCGCGAGGCGCTGTGCAACAGCTTGCAGTCCTATGCAGATGCCTGCCAGGCGCTTGGTGTCCAGATCCCTGTGTGGAGGAACGCAACATTCTGCC
Seq A exon
GTAAGTCAGAAACAGAAAAGCACCCCATTTTCTGAGCTGGTTAGCTGCTGTGAGTGTGGGAGCACCCTTTGTTGGTCACATTGCCGGTGTGGTTCTTTCTATGTAGAAGGCATCCCACTGGGGCAGCTGGGAGGAGCTGTGGGGCGATTGCATCCTTCCAAAGCCCCCAGTGAATCTGGCCTACCTTGGGAGCACTGCGGGTGTAGGATGACTGATGATTTCACTGCTTTTCCTTTTGTCTTGGCAG
Seq C2 exon
CCATCACATGCCCAGCCAACAGCCACTACGAGCCCTGTGCTGCAGCTTGCCCTGCTACGTGTGTTAGCCCAACGGCACCATATAACTGCAGCTTGCCGTGCGTGGAGGGATGTGTATGCGACAGCGGGTACCTGCTCTACAACAGTCAGTGTGTGCCCATCCAGCAGTGTGGGTGCTGGCACAACGGGCAGCACTACCCGGTGGGCTCAGAGTTCTGGACGGACAACACCTGCTCGTCCAAGTGCACATGTCCCACGCGAGGAGGCAAAGTCCAGTGCTCCAGTGCATCGTGCCCTGCTGGCCAGTTCTGTGGTGTGCAGAATGGGAAACCCGAGTGCCTGGAACACTCCTACGGCATCTGTCACGTCCACGGGGACCCTCACTACAACACCTTTGACAAGGTGACGCACAACTTCATGGGGAACTGCACGTACACCCTGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208:ENSGALT00000011664:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=79.8)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=36.2),PF127142=TILa=WD(100=38.3),PF0009420=VWD=PU(18.1=18.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGTGCCTGTATGACCTG
R:
ATGGGCACACACTGACTGTTG
Band lengths:
293-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]