MmuINT0063663 @ mm9
Intron Retention
Gene
ENSMUSG00000047730 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:MGI Symbol;Acc:MGI:2444336]
Coordinates
chr7:28878334-28879218:+
Coord C1 exon
chr7:28878334-28878916
Coord A exon
chr7:28878917-28879018
Coord C2 exon
chr7:28879019-28879218
Length
102 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
TGGGCATTCTCTTCTTACAGCAA
3' ss Score
8.11
Exon sequences
Seq C1 exon
GTGAACGGTGTGGACACGAAGCTGCCTGTGATGCTGGATGGAGGCAAGATCCGAGTCTCCCAGCACGGGTCCGACGTCGTGATTGAAACCGACTTTGGCCTGCGTGTGGCCTATGACCTTGTGTACTATGTTCGGGTAACCATCCCAGGCAACTACTACAAGCAGATGTGTGGTCTGTGCGGGGATTACAACGGGGACCCCAAGGACGACTTCCAGAAGCCCGACGGCTCTCAGACAACAGACCCCAGTGACTTTGGTAACTCCTGGGAGGAAGCTGTGCCCGACTCCCCCTGCGCACCAGTGCCTCCCTGCACAGGAGATGACTGTGACACCGAGTGCAGCCCCGAGCTGCAGGACAAATATCATGGGGAGCAGTTCTGCGGGCTGCTCACCAGCCCCACAGGGCCACTGGCTGCCTGCCACAAGCTGCTAGACCCCCAGGGTCCCTTACAAGACTGTGTCTTTGATCTCTGCCTGGGTGGCGGAAACCAGAGCATTCTCTGTAACATCATCCATGCCTACGTGAGCGCCTGCCAGGCGGCTGGGGGGCAAGTGGAGCCATGGAGGACGGAAACTTTCTGTC
Seq A exon
GTGAGTAACAGGGCATTGAGGAGGGGTGAGGGAGGTTGGGCCAGAGAAGGGGTGGGATCCCCAACCCCACCCCGCTCTCTGATGGGCATTCTCTTCTTACAG
Seq C2 exon
CAATGGAGTGCCCCCCTCACAGCCACTATGAGGTCTGTGCAGACACTTGCTCCCTGGGCTGCTGGGCTCTGAATACACCCCAGCAGTGCCCAGAAGGGTGTGCTGAGGGCTGTGAATGTGACTCTGGCTTCCTGTACAACGGCAAAGCCTGCGTGCCCATCGAGCAATGTGGCTGCTACCACAATGGGGTCTACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047730-Fcgbp:NM_001122603:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.7=39.0),PF087426=C8=WD(100=39.0)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(17.9=14.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGATCTCTGCCTGGGTGG
R:
CCAGAGTCACATTCACAGCCC
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: