DreINT0010761 @ danRer10
Intron Retention
Gene
ENSDARG00000098278 | FCGBP (2 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr15:36542904-36544658:-
Coord C1 exon
chr15:36544073-36544658
Coord A exon
chr15:36543104-36544072
Coord C2 exon
chr15:36542904-36543103
Length
969 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TATTTGTTCTTATCTTCCAGCAA
3' ss Score
9.22
Exon sequences
Seq C1 exon
GTCAATGGGGTTTTAACAAACCTACCGTACAGTTCAAACAGTTTAAATGGCTCACTGGTGCGGGCCTATAAGGACGGTGTGAACTACATCATCGAGACTGGCTTTGGCCTCAAAGTGACCTATGATCTGGTCTACTACGTCACTGTTACCATCCCTGGAAACTATCGTAACAAGACCTGTGGACTCTGCGGCGTCTTTGATGGAAATCCATCCAATGACTTCCGTCTCCCAGATGGCAATATTACAAACGATCCTACTATATTCGGGAGAGCCTGGAAAGTGGACGTCCCTGGATCTGTGTGTGAGGAAGACGGTTGTGTAACAGGCACATGTCTGAACTGTGATCCCCAGCTGAAAGCCATCTATGAAAAGCCTCCATATTGTGGCGTTCTGATTGATCCCAATGGGCCGTTTTCTGCCTGTCATGTTGTGCTGAACCCTGCAGCTTATCTGAAGGACTGCGTGTTTGATACGTGTGTGTCTGGGGGCAGCAGCAAGGTGGTTTGTGACAGTGTGGCAAGATATGCTATTAACTGCCACACAGCCGGAGTCAATATACAAAATTGGAGGACGGATTCTTTTTGCC
Seq A exon
GTAAGTTTGAGCAATCAAAAAGATGATTTTCGATTTACATTATTTAAATATGACAAAAACAAGGAGTTTATGTCCATAAAGATCAATTCATCAATTAATATATTATGCATTCTACAAAACATGATTAAGCAGCACAAATGTTTCTCATTTATTAAATCTGTGTGTGTTGATGCAGAGAATTTAGATTTACCATCCTAGAAATAAATGCAGTTTAAAACATATTAAAATATGACCATAAACAAAGAGGTTATGACCATAAAGTCCAATCAATTCAAAACATATATTATGGGATTCACAAAAGTATTAAGCAGCATAAATGTTTATTATCAGACATGGAAAAAAAAAAAACTATATAAACAATATAATTGTTAAATATTGTTTTGTTTTTATTATTATATTTAAATATTTAAAAATAAAATTGGCGATTTTACTATTTGTACATATATGTGTAAATATATGCGTGCATACATGTACATATATAGGTTCATATATGAATGTATATATGTGTATGTGCACATATATGTTCACCTAAATGTTTACCTATACATTAGTAAAATGATTCAAATCCATAGCTGCTAGGCAACATAAATAAAATAAATGTAATTTTTTTATTTACTTAAGAACAATTAAATAGTACAATATATATATATATATATAGTACAAGAACAAAAATAAGACAAAAAACTTAACAGAAAAAAAAAATGTCATACATTACAATTGACCTTGTAAATGTTTCAGGAAAACGTGTAGACAGCATAGCTTTACATCTCCTATAATAAGCTATATAGGAGACATATCTTGTATGTACATATAGGGCTAATATGTGGATATAAAAAAGCAATACATGAGACCTATATGGTCTGTATATGCACATACATGCAGCTCAATTTTACCTATTTGTGGCATATGTACACATATATGCAGTATATACTGTTGAAGTCAGAATTATTATTTGTTCTTATCTTCCAG
Seq C2 exon
CAATGTTGTGTCCCGCTCACAGTCATTATGAGCTGTGTTCAGATGTCTGCTCTGCTGCTTGTCCCGGTCTCACCTCAATAATCCAGTGTCCTAAGACCTGCACAGAGGGCTGCGCTTGTGACAGGGGTTTCCTCTTCAATGGCCAGATCTGTGTTGAACACCGGCAGTGTGGCTGCTATGAGCAGGGGCGTACGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098278:ENSDART00000164162:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.5=40.3),PF087426=C8=WD(100=38.3)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=13.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTGTGAGGAAGACGGT
R:
ACAAGCAGCAGAGCAGACATC
Band lengths:
354-1323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]